1 HisKA#1
97-164 aa · 68 aa · 21.2% of protein
Raw token
HisKA:97:0.00000000000328:164:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1153_RS06425
Histidine kinase, Classic
Clostridioides difficile · GCF_900688555
ClassHKTypeClassicLength321 aaTM0ValidatedNoCompleteYesContexthexad
Gene IDGCF_900688555#E1153_RS06425Stable P2CS identifier used across views.
GenomeGCF_900688555Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length321 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 321 aa (56.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa321 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
208-320 aa · 113 aa · 35.2% of protein
Raw token
HATPase_c:208:2.75e-31:320:113:109- Raw architecture: HisKA:97:0.00000000000328:164:68:64#HATPase_c:208:2.75e-31:320:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelhexadGCF_900688555::NZ_CAADAX010000003.1::G00017
Group size66 locus tags listed below.
HK / RR3 / 3Counts resolved for the local TCS neighborhood.
Context span123966-130815Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402364_01291RefSeq proteinWP_235666860.1
Context group ID
GCF_900688555::NZ_CAADAX010000003.1::G00017Context members
E1153_RS06405E1153_RS06410E1153_RS06415E1153_RS06420E1153_RS06425E1153_RS06430
Partner locus tags
E1153_RS06405E1153_RS06410E1153_RS06415E1153_RS06420E1153_RS06425E1153_RS06430
Partner old locus tags
SAMEA1402364_01287SAMEA1402364_01288SAMEA1402364_01289SAMEA1402364_01290SAMEA1402364_01291SAMEA1402364_01292
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235666860.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1153_RS06425Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402364_01291Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAADAX010000003.1Sequence record reported by the local genomic context database.
Genomic interval129 118-130 083 nt966 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span123 966-130 815 ntGCF_900688555::NZ_CAADAX010000003.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900688555::NZ_CAADAX010000003.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelhexadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAADAX010000003.1All displayed genes belong to this local TCS context.
Neighborhood span123 966-130 815 nt6 850 nt
Members61 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 966 nt130 815 nt
Neighborhood gene cards
6 genes in the current local neighborhood.
E1153_RS06405GCF_900688555#E1153_RS06405
HKClassic
123 966-126 518 nt · Forward (+)
E1153_RS06410GCF_900688555#E1153_RS06410
RROmpR
126 552-127 250 nt · Forward (+)
E1153_RS06415GCF_900688555#E1153_RS06415
HKClassic
127 359-128 207 nt · Forward (+)
E1153_RS06420GCF_900688555#E1153_RS06420
RROmpR
128 241-128 939 nt · Forward (+)
E1153_RS06425GCF_900688555#E1153_RS06425
HKClassicCurrent focus
129 118-130 083 nt · Forward (+)
E1153_RS06430GCF_900688555#E1153_RS06430
RROmpR
130 117-130 815 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004319825#E0R80_RS20400Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2867837
Simplified PFAM architecture for HKOC_2867837
PFAM domain coverage: 179 / 321 aa (55.8%)
1 aa321 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[97-164] | HATPase_c[209-319]
- Domain count: 2
- Matched identifier: HKOC_2867837
- Positioned domains: HisKA 97-164 ; HATPase_c 209-319
Cluster members and taxonomy
Representative gene: GCF_004319825#E0R80_RS20400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900688555
Assembly7614_7#46 · Scaffoldhaploid
Genome composition4 416 792 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 113 · HK 52 · RR 60CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key