1 PAS_9#1
529-629 aa · 101 aa · 10.4% of protein
Raw token
PAS_9:529:0.000066:629:101:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1153_RS01205
Histidine kinase, Classic
Clostridioides difficile · GCF_900688555
ClassHKTypeClassicLength972 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900688555#E1153_RS01205Stable P2CS identifier used across views.
GenomeGCF_900688555Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length972 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage284 / 972 aa (29.2%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa972 aa
Domain-by-domain annotation3 items
2 HisKA#2
715-786 aa · 72 aa · 7.4% of protein
Raw token
HisKA:715:0.00000000000000737:786:72:643 HATPase_c#3
833-943 aa · 111 aa · 11.4% of protein
Raw token
HATPase_c:833:2.12e-31:943:111:109- Raw architecture: PAS_9:529:0.000066:629:101:102#HisKA:715:0.00000000000000737:786:72:64#HATPase_c:833:2.12e-31:943:111:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900688555::NZ_CAADAX010000001.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span278557-281475Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402364_00247RefSeq proteinWP_131736361.1
Context group ID
GCF_900688555::NZ_CAADAX010000001.1::G00006Context members
E1153_RS01205
Partner locus tags
E1153_RS01205
Partner old locus tags
SAMEA1402364_00247
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131736361.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1153_RS01205Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402364_00247Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAADAX010000001.1Sequence record reported by the local genomic context database.
Genomic interval278 557-281 475 nt2 919 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span278 557-281 475 ntGCF_900688555::NZ_CAADAX010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900688555::NZ_CAADAX010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAADAX010000001.1All displayed genes belong to this local TCS context.
Neighborhood span278 557-281 475 nt2 919 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
278 557 nt281 475 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E1153_RS01205GCF_900688555#E1153_RS01205
HKClassicCurrent focus
278 557-281 475 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900688555#E1153_RS01205The current gene is the representative for this cluster.
PFAM architecturePAS_8 + PAS_9 + HisKA + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0311152
Simplified PFAM architecture for HKOC_0311152
PFAM domain coverage: 377 / 972 aa (38.8%)
1 aa972 aa
PAS_8PAS_9HisKAHisKAHATPase_c
- Simplified architecture: PAS_8 + PAS_9 + HisKA + HisKA + HATPase_c
- Raw architecture: PAS_8[303-355] | PAS_9[529-632] | HisKA[655-691] | HisKA[715-786] | HATPase_c[833-943]
- Domain count: 5
- Matched identifier: HKOC_0311152
- Positioned domains: PAS_8 303-355 ; PAS_9 529-632 ; HisKA 655-691 ; HisKA 715-786 ; HATPase_c 833-943
Cluster members and taxonomy
Representative gene: GCF_900688555#E1153_RS01205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900688555
Assembly7614_7#46 · Scaffoldhaploid
Genome composition4 416 792 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 113 · HK 52 · RR 60CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key