1 HisKA#1
118-178 aa · 61 aa · 18.3% of protein
Raw token
HisKA:118:0.000000812:178:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E4V63_RS12370
Histidine kinase, Classic
Clostridioides difficile · GCF_900687405
ClassHKTypeClassicLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900687405#E4V63_RS12370Stable P2CS identifier used across views.
GenomeGCF_900687405Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 334 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
224-331 aa · 108 aa · 32.3% of protein
Raw token
HATPase_c:224:3.15e-25:331:108:109- Raw architecture: HisKA:118:0.000000812:178:63:64#HATPase_c:224:3.15e-25:331:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900687405::NZ_CAACZO010000011.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87935-89637Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1022486_02518RefSeq proteinWP_021408060.1
Context group ID
GCF_900687405::NZ_CAACZO010000011.1::G00032Context members
E4V63_RS12365E4V63_RS12370
Partner locus tags
E4V63_RS12365E4V63_RS12370
Partner old locus tags
SAMEA1022486_02517SAMEA1022486_02518
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021408060.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE4V63_RS12370Primary locus identifier stored in the genes table.
Old locus tagSAMEA1022486_02518Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAACZO010000011.1Sequence record reported by the local genomic context database.
Genomic interval88 633-89 637 nt1 005 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span87 935-89 637 ntGCF_900687405::NZ_CAACZO010000011.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900687405::NZ_CAACZO010000011.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAACZO010000011.1All displayed genes belong to this local TCS context.
Neighborhood span87 935-89 637 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 935 nt89 637 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E4V63_RS12365GCF_900687405#E4V63_RS12365
RROmpR
87 935-88 609 nt · Forward (+)
E4V63_RS12370GCF_900687405#E4V63_RS12370
HKClassicCurrent focus
88 633-89 637 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450785#QO7_RS07340Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849844
Simplified PFAM architecture for HKOC_2849844
PFAM domain coverage: 108 / 334 aa (32.3%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-331]
- Domain count: 1
- Matched identifier: HKOC_2849844
- Positioned domains: HATPase_c 224-331
Cluster members and taxonomy
Representative gene: GCF_000450785#QO7_RS07340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900687405
Assembly6437_4#10 · Scaffoldhaploid
Genome composition4 057 710 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 45 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key