1 Response_reg#1
6-120 aa · 115 aa · 55.8% of protein
Raw token
Response_reg:6:3.12e-19:120:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ41_RS10505
Response regulator NarL family
Clostridioides difficile · GCF_900243315
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900243315#DBQ41_RS10505Stable P2CS identifier used across views.
GenomeGCF_900243315Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 206 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
140-196 aa · 57 aa · 27.7% of protein
Raw token
HTH_LUXR:140:2.05e-17:196:57:58- Raw architecture: Response_reg:6:3.12e-19:120:116:111#HTH_LUXR:140:2.05e-17:196:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900243315::NZ_OFAB01000060.1::G00046
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span35813-36433Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243315::NZ_OFAB01000060.1::G00046Context members
DBQ41_RS10505
Partner locus tags
DBQ41_RS10505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074080709.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ41_RS10505Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OFAB01000060.1Sequence record reported by the local genomic context database.
Genomic interval35 813-36 433 nt621 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 813-36 433 ntGCF_900243315::NZ_OFAB01000060.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243315::NZ_OFAB01000060.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OFAB01000060.1All displayed genes belong to this local TCS context.
Neighborhood span35 813-36 433 nt621 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 813 nt36 433 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DBQ41_RS10505GCF_900243315#DBQ41_RS10505
RRNarLCurrent focus
35 813-36 433 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243315#DBQ41_RS10505The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2090125
Simplified PFAM architecture for RROC_2090125
PFAM domain coverage: 169 / 206 aa (82.0%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-119] | GerE[142-196]
- Domain count: 2
- Matched identifier: RROC_2090125
- Positioned domains: Response_reg 6-119 ; GerE 142-196
Cluster members and taxonomy
Representative gene: GCF_900243315#DBQ41_RS10505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243315
AssemblySE844 · Scaffoldhaploid
Genome composition4 279 369 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key