Gene detail

B2B97_RS03305

Histidine kinase, Classic

Clostridioides difficile · GCF_900166185

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength307 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_900166185#B2B97_RS03305Stable P2CS identifier used across views.

GenomeGCF_900166185Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides

Selected clusterHKOC_2881211Run 6 · 140 sequences · id 100% · cov 80% · representative

External referencesWP_254049752.1 · MIST4 B2B97_RS03305RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length307 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage174 / 307 aa (56.7%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.

Biotite-like domain view for B2B97_RS03305

Domain-by-domain annotation2 items

1 HisKA#1

87-156 aa · 70 aa · 22.8% of protein

Raw tokenHisKA:87:0.00000000000156:156:70:64

2 HATPase_c#2

203-306 aa · 104 aa · 33.9% of protein

Raw tokenHATPase_c:203:8.23e-28:306:106:109

Raw architecture: HisKA:87:0.00000000000156:156:70:64#HATPase_c:203:8.23e-28:306:106:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_900166185::NZ_FUTL01000002.1::G00053

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span36076-37727Genomic interval covered by the local TCS group.

Identifiers

Old locus tagSAMEA2239402_00657RefSeq proteinWP_254049752.1

Context group IDGCF_900166185::NZ_FUTL01000002.1::G00053

Context members

B2B97_RS03300B2B97_RS03305

Partner locus tags

B2B97_RS03300B2B97_RS03305

Partner old locus tags

SAMEA2239402_00657

Partner protein IDs

WP_144081901.1 WP_254049752.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_254049752.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagB2B97_RS03305Primary locus identifier stored in the genes table.

Old locus tagSAMEA2239402_00657Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_FUTL01000002.1Sequence record reported by the local genomic context database.

Genomic interval36 804-37 727 nt924 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span36 076-37 727 ntGCF_900166185::NZ_FUTL01000002.1::G00053

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_900166185::NZ_FUTL01000002.1::G00053

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_FUTL01000002.1All displayed genes belong to this local TCS context.

Neighborhood span36 076-37 727 nt1 652 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

36 076 nt37 727 nt

+-B2B97_RS03300 B2B97_RS03305

Neighborhood gene cards

2 genes in the current local neighborhood.

B2B97_RS03300GCF_900166185#B2B97_RS03300

RRCheY

36 076-36 516 nt · Forward (+)

RefSeq WP_144081901.1

Open gene

B2B97_RS03305GCF_900166185#B2B97_RS03305

HKClassicCurrent focus

36 804-37 727 nt · Forward (+)

Old locus SAMEA2239402_00657RefSeq WP_254049752.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2881211HK

Run 6140 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_2881211Run 6 · HK · 140 sequences

Representative sequenceGCF_900166185#B2B97_RS03305The current gene is the representative for this cluster.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_2881211

Simplified PFAM architecture for HKOC_2881211

PFAM domain coverage: 171 / 307 aa (55.7%)

1 aa307 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[90-156] | HATPase_c[203-306]
Domain count: 2
Matched identifier: HKOC_2881211
Positioned domains: HisKA 90-156 ; HATPase_c 203-306

Cluster members and taxonomy

Representative gene: GCF_900166185#B2B97_RS03305

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 496 · GCF_900166185

Assembly11670_1#54 · Scaffoldhaploid

Genome composition4 215 495 bp · 28,5% GCClostridioides difficile

Signal transduction countsGenes 103 · HK 48 · RR 53CheA 1 · PP 2

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key