1 Response_reg#1
2-113 aa · 112 aa · 55.2% of protein
Raw token
Response_reg:2:3.15e-21:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B1K22_RS07455
Response regulator NarL family
Bifidobacterium longum · GCF_900157165
ClassRRTypeNarLLength203 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900157165#B1K22_RS07455Stable P2CS identifier used across views.
GenomeGCF_900157165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length203 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 203 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa203 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
144-195 aa · 52 aa · 25.6% of protein
Raw token
HTH_LUXR:144:0.000000000000266:195:52:58- Raw architecture: Response_reg:2:3.15e-21:113:113:111#HTH_LUXR:144:0.000000000000266:195:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900157165::NZ_FTRS01000255.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1307-1918Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900157165::NZ_FTRS01000255.1::G00012Context members
B1K22_RS07455
Partner locus tags
B1K22_RS07455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_257616038.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB1K22_RS07455Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FTRS01000255.1Sequence record reported by the local genomic context database.
Genomic interval1 307-1 918 nt612 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 307-1 918 ntGCF_900157165::NZ_FTRS01000255.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900157165::NZ_FTRS01000255.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FTRS01000255.1All displayed genes belong to this local TCS context.
Neighborhood span1 307-1 918 nt612 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 307 nt1 918 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B1K22_RS07455GCF_900157165#B1K22_RS07455
RRNarLCurrent focus
1 307-1 918 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900157165#B1K22_RS07455The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2114335
Simplified PFAM architecture for RROC_2114335
PFAM domain coverage: 162 / 203 aa (79.8%)
1 aa203 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-111] | GerE[144-195]
- Domain count: 2
- Matched identifier: RROC_2114335
- Positioned domains: Response_reg 2-111 ; GerE 144-195
Cluster members and taxonomy
Representative gene: GCF_900157165#B1K22_RS07455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_900157165
AssemblyBifido_12_v1 · Contighaploid
Genome composition2 072 880 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 21 · HK 7 · RR 11CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key