1 Response_reg#1
1-110 aa · 110 aa · 60.4% of protein
Raw token
Response_reg:1:1.06e-25:110:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B1K23_RS10930
Response regulator, unclassified
Bifidobacterium longum · GCF_900157115
ClassRRTypeunclassifiedLength182 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900157115#B1K23_RS10930Stable P2CS identifier used across views.
GenomeGCF_900157115Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length182 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 182 aa (60.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa182 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:1.06e-25:110:110:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900157115::NZ_FTRJ01000079.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-546Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900157115::NZ_FTRJ01000079.1::G00001Context members
B1K23_RS10930
Partner locus tags
B1K23_RS10930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_143246950.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB1K23_RS10930Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FTRJ01000079.1Sequence record reported by the local genomic context database.
Genomic interval1-546 nt546 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-546 ntGCF_900157115::NZ_FTRJ01000079.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900157115::NZ_FTRJ01000079.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FTRJ01000079.1All displayed genes belong to this local TCS context.
Neighborhood span1-546 nt546 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt546 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B1K23_RS10930GCF_900157115#B1K23_RS10930
RRunclassifiedCurrent focus
1-546 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900157115#B1K23_RS10930The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2184461
Simplified PFAM architecture for RROC_2184461
PFAM domain coverage: 147 / 182 aa (80.8%)
1 aa182 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[1-109] | Trans_reg_C[145-182]
- Domain count: 2
- Matched identifier: RROC_2184461
- Positioned domains: Response_reg 1-109 ; Trans_reg_C 145-182
Cluster members and taxonomy
Representative gene: GCF_900157115#B1K23_RS10930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_900157115
AssemblyBifido_05_v1 · Contighaploid
Genome composition2 334 740 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key