1 HisKA#1
231-294 aa · 64 aa · 14.0% of protein
Raw token
HisKA:231:0.00000000129:294:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B1K23_RS04125
Histidine kinase, Classic
Bifidobacterium longum · GCF_900157115
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900157115#B1K23_RS04125Stable P2CS identifier used across views.
GenomeGCF_900157115Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 458 aa (38.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
345-454 aa · 110 aa · 24.0% of protein
Raw token
HATPase_c:345:7.9e-24:454:110:109- Raw architecture: HisKA:231:0.00000000129:294:64:64#HATPase_c:345:7.9e-24:454:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900157115::NZ_FTRJ01000007.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span508-2594Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900157115::NZ_FTRJ01000007.1::G00006Context members
B1K23_RS04125B1K23_RS04130
Partner locus tags
B1K23_RS04125B1K23_RS04130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003431912.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5EFW1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5EFW1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB1K23_RS04125Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FTRJ01000007.1Sequence record reported by the local genomic context database.
Genomic interval508-1 884 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span508-2 594 ntGCF_900157115::NZ_FTRJ01000007.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900157115::NZ_FTRJ01000007.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FTRJ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span508-2 594 nt2 087 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
508 nt2 594 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B1K23_RS04125GCF_900157115#B1K23_RS04125
HKClassicCurrent focus
508-1 884 nt · Reverse (-)
B1K23_RS04130GCF_900157115#B1K23_RS04130
RROmpR
1 884-2 594 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235925#HMPREF1123_RS15040Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1858606
Simplified PFAM architecture for HKOC_1858606
PFAM domain coverage: 175 / 458 aa (38.2%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[232-295] | HATPase_c[345-455]
- Domain count: 2
- Matched identifier: HKOC_1858606
- Positioned domains: HisKA 232-295 ; HATPase_c 345-455
Cluster members and taxonomy
Representative gene: GCF_000235925#HMPREF1123_RS15040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_900157115
AssemblyBifido_05_v1 · Contighaploid
Genome composition2 334 740 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key