1 Response_reg#1
4-87 aa · 84 aa · 34.4% of protein
Raw token
Response_reg:4:0.0000000198:87:85:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BQ5364_RS15235
Response regulator LytTR family
Coprococcus phoceensis · GCF_900104635
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900104635#BQ5364_RS15235Stable P2CS identifier used across views.
GenomeGCF_900104635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 244 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-235 aa · 96 aa · 39.3% of protein
Raw token
LytTR:140:0.00000000000969:235:101:98- Raw architecture: Response_reg:4:0.0000000198:87:85:111#LytTR:140:0.00000000000969:235:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900104635::NZ_FNWC01000007.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2444046-2444780Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900104635::NZ_FNWC01000007.1::G00036Context members
BQ5364_RS15235
Partner locus tags
BQ5364_RS15235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071144601.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBQ5364_RS15235Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FNWC01000007.1Sequence record reported by the local genomic context database.
Genomic interval2 444 046-2 444 780 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 444 046-2 444 780 ntGCF_900104635::NZ_FNWC01000007.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900104635::NZ_FNWC01000007.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNWC01000007.1All displayed genes belong to this local TCS context.
Neighborhood span2 444 046-2 444 780 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 444 046 nt2 444 780 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BQ5364_RS15235GCF_900104635#BQ5364_RS15235
RRLytTRCurrent focus
2 444 046-2 444 780 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926645#AB5791_RS18310Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0820797
Simplified PFAM architecture for RROC_0820797
PFAM domain coverage: 207 / 244 aa (84.8%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[141-235]
- Domain count: 2
- Matched identifier: RROC_0820797
- Positioned domains: Response_reg 4-115 ; LytTR 141-235
Cluster members and taxonomy
Representative gene: GCF_040926645#AB5791_RS18310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 870 993 · GCF_900104635
AssemblyPRJEB16356 · Contigreference genome · haploid
Genome composition3 601 259 bp · 40,0% GCCoprococcus phoceensis
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key