1 HisKA#1
123-187 aa · 65 aa · 18.3% of protein
Raw token
HisKA:123:4.1e-17:187:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BQ5364_RS12910
Histidine kinase, Classic
Coprococcus phoceensis · GCF_900104635
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900104635#BQ5364_RS12910Stable P2CS identifier used across views.
GenomeGCF_900104635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 355 aa (49.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
235-343 aa · 109 aa · 30.7% of protein
Raw token
HATPase_c:235:1.86e-25:343:110:109- Raw architecture: HisKA:123:4.1e-17:187:65:64#HATPase_c:235:1.86e-25:343:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900104635::NZ_FNWC01000007.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1903715-1905470Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900104635::NZ_FNWC01000007.1::G00030Context members
BQ5364_RS12910BQ5364_RS12915
Partner locus tags
BQ5364_RS12910BQ5364_RS12915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022251203.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBQ5364_RS12910Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FNWC01000007.1Sequence record reported by the local genomic context database.
Genomic interval1 903 715-1 904 782 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 903 715-1 905 470 ntGCF_900104635::NZ_FNWC01000007.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900104635::NZ_FNWC01000007.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNWC01000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 903 715-1 905 470 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 903 715 nt1 905 470 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BQ5364_RS12910GCF_900104635#BQ5364_RS12910
HKClassicCurrent focus
1 903 715-1 904 782 nt · Reverse (-)
BQ5364_RS12915GCF_900104635#BQ5364_RS12915
RROmpR
1 904 772-1 905 470 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900104635#BQ5364_RS12910The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2778837
Simplified PFAM architecture for HKOC_2778837
PFAM domain coverage: 173 / 355 aa (48.7%)
1 aa355 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-188] | HATPase_c[236-343]
- Domain count: 2
- Matched identifier: HKOC_2778837
- Positioned domains: HisKA 124-188 ; HATPase_c 236-343
Cluster members and taxonomy
Representative gene: GCF_900104635#BQ5364_RS12910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 870 993 · GCF_900104635
AssemblyPRJEB16356 · Contigreference genome · haploid
Genome composition3 601 259 bp · 40,0% GCCoprococcus phoceensis
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key