1 Response_reg#1
6-121 aa · 116 aa · 44.1% of protein
Raw token
Response_reg:6:1.01e-20:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BQ5364_RS10390
Response regulator Spo0A family
Coprococcus phoceensis · GCF_900104635
ClassRRTypeSpo0ALength263 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900104635#BQ5364_RS10390Stable P2CS identifier used across views.
GenomeGCF_900104635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 263 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
153-256 aa · 104 aa · 39.5% of protein
Raw token
Spo0A_C:153:2.15e-62:256:104:104- Raw architecture: Response_reg:6:1.01e-20:121:116:111#Spo0A_C:153:2.15e-62:256:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900104635::NZ_FNWC01000007.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1381662-1382453Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900104635::NZ_FNWC01000007.1::G00021Context members
BQ5364_RS10390
Partner locus tags
BQ5364_RS10390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022250941.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBQ5364_RS10390Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FNWC01000007.1Sequence record reported by the local genomic context database.
Genomic interval1 381 662-1 382 453 nt792 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 381 662-1 382 453 ntGCF_900104635::NZ_FNWC01000007.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900104635::NZ_FNWC01000007.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNWC01000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 381 662-1 382 453 nt792 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 381 662 nt1 382 453 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BQ5364_RS10390GCF_900104635#BQ5364_RS10390
RRSpo0ACurrent focus
1 381 662-1 382 453 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695925#PG788_RS01995Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0642248
Simplified PFAM architecture for RROC_0642248
PFAM domain coverage: 219 / 263 aa (83.3%)
1 aa263 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[153-256]
- Domain count: 2
- Matched identifier: RROC_0642248
- Positioned domains: Response_reg 6-120 ; Spo0A_C 153-256
Cluster members and taxonomy
Representative gene: GCF_027695925#PG788_RS01995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 870 993 · GCF_900104635
AssemblyPRJEB16356 · Contigreference genome · haploid
Genome composition3 601 259 bp · 40,0% GCCoprococcus phoceensis
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key