1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:3.36e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BQ5364_RS08710
Response regulator OmpR family
Coprococcus phoceensis · GCF_900104635
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900104635#BQ5364_RS08710Stable P2CS identifier used across views.
GenomeGCF_900104635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 225 aa (81.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:148:3.25e-34:221:77:77- Raw architecture: Response_reg:4:3.36e-34:113:111:111#Trans_reg_C:148:3.25e-34:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900104635::NZ_FNWC01000007.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1030037-1032101Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900104635::NZ_FNWC01000007.1::G00019Context members
BQ5364_RS08705BQ5364_RS08710
Partner locus tags
BQ5364_RS08705BQ5364_RS08710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071144071.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBQ5364_RS08710Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FNWC01000007.1Sequence record reported by the local genomic context database.
Genomic interval1 031 424-1 032 101 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 030 037-1 032 101 ntGCF_900104635::NZ_FNWC01000007.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900104635::NZ_FNWC01000007.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNWC01000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 030 037-1 032 101 nt2 065 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 030 037 nt1 032 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BQ5364_RS08705GCF_900104635#BQ5364_RS08705
HKClassic
1 030 037-1 031 440 nt · Reverse (-)
BQ5364_RS08710GCF_900104635#BQ5364_RS08710
RROmpRCurrent focus
1 031 424-1 032 101 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900104635#BQ5364_RS08710The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1524572
Simplified PFAM architecture for RROC_1524572
PFAM domain coverage: 183 / 225 aa (81.3%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1524572
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_900104635#BQ5364_RS08710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 870 993 · GCF_900104635
AssemblyPRJEB16356 · Contigreference genome · haploid
Genome composition3 601 259 bp · 40,0% GCCoprococcus phoceensis
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key