1 Response_reg#1
3-76 aa · 74 aa · 40.0% of protein
Raw token
Response_reg:3:0.000000000000872:76:76:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BQ5364_RS07745
Response regulator LytTR family
Coprococcus phoceensis · GCF_900104635
ClassRRTypeLytTRLength185 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900104635#BQ5364_RS07745Stable P2CS identifier used across views.
GenomeGCF_900104635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length185 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 185 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa185 aa
Domain-by-domain annotation2 items
2 LytTR#2
93-175 aa · 83 aa · 44.9% of protein
Raw token
LytTR:93:1.12e-22:175:88:98- Raw architecture: Response_reg:3:0.000000000000872:76:76:111#LytTR:93:1.12e-22:175:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900104635::NZ_FNWC01000007.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span840920-841477Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900104635::NZ_FNWC01000007.1::G00015Context members
BQ5364_RS07745
Partner locus tags
BQ5364_RS07745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004612506.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBQ5364_RS07745Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FNWC01000007.1Sequence record reported by the local genomic context database.
Genomic interval840 920-841 477 nt558 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span840 920-841 477 ntGCF_900104635::NZ_FNWC01000007.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900104635::NZ_FNWC01000007.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNWC01000007.1All displayed genes belong to this local TCS context.
Neighborhood span840 920-841 477 nt558 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
840 920 nt841 477 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BQ5364_RS07745GCF_900104635#BQ5364_RS07745
RRLytTRCurrent focus
840 920-841 477 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027697655#PG826_RS04105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2178665
Simplified PFAM architecture for RROC_2178665
PFAM domain coverage: 141 / 185 aa (76.2%)
1 aa185 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[2-58] | LytTR[92-175]
- Domain count: 2
- Matched identifier: RROC_2178665
- Positioned domains: Response_reg 2-58 ; LytTR 92-175
Cluster members and taxonomy
Representative gene: GCF_027697655#PG826_RS04105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 870 993 · GCF_900104635
AssemblyPRJEB16356 · Contigreference genome · haploid
Genome composition3 601 259 bp · 40,0% GCCoprococcus phoceensis
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key