1 Response_reg#1
2-114 aa · 113 aa · 50.0% of protein
Raw token
Response_reg:2:2.04e-31:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BQ5364_RS04300
Response regulator OmpR family
Coprococcus phoceensis · GCF_900104635
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900104635#BQ5364_RS04300Stable P2CS identifier used across views.
GenomeGCF_900104635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:147:2.98e-35:220:77:77- Raw architecture: Response_reg:2:2.04e-31:114:113:111#Trans_reg_C:147:2.98e-35:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900104635::NZ_FNWC01000007.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span142017-144018Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900104635::NZ_FNWC01000007.1::G00007Context members
BQ5364_RS04300BQ5364_RS04305
Partner locus tags
BQ5364_RS04300BQ5364_RS04305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004614658.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBQ5364_RS04300Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FNWC01000007.1Sequence record reported by the local genomic context database.
Genomic interval142 017-142 697 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span142 017-144 018 ntGCF_900104635::NZ_FNWC01000007.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900104635::NZ_FNWC01000007.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNWC01000007.1All displayed genes belong to this local TCS context.
Neighborhood span142 017-144 018 nt2 002 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
142 017 nt144 018 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BQ5364_RS04300GCF_900104635#BQ5364_RS04300
RROmpRCurrent focus
142 017-142 697 nt · Forward (+)
BQ5364_RS04305GCF_900104635#BQ5364_RS04305
HKClassic
142 687-144 018 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695925#PG788_RS07880Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1439364
Simplified PFAM architecture for RROC_1439364
PFAM domain coverage: 187 / 226 aa (82.7%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-114] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1439364
- Positioned domains: Response_reg 2-114 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_027695925#PG788_RS07880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 870 993 · GCF_900104635
AssemblyPRJEB16356 · Contigreference genome · haploid
Genome composition3 601 259 bp · 40,0% GCCoprococcus phoceensis
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key