1 dCache_1#1
136-286 aa · 151 aa · 24.4% of protein
Raw token
dCache_1:136:0.00000000000252:286:155:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BQ5364_RS03120
Histidine kinase, Classic
Coprococcus phoceensis · GCF_900104635
ClassHKTypeClassicLength620 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900104635#BQ5364_RS03120Stable P2CS identifier used across views.
GenomeGCF_900104635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length620 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage337 / 620 aa (54.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 His_kinase#2
386-465 aa · 80 aa · 12.9% of protein
Raw token
His_kinase:386:7.33e-35:465:80:803 HATPase_c#3
481-586 aa · 106 aa · 17.1% of protein
Raw token
HATPase_c:481:2.08e-18:586:109:109- Raw architecture: dCache_1:136:0.00000000000252:286:155:195#His_kinase:386:7.33e-35:465:80:80#HATPase_c:481:2.08e-18:586:109:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900104635::NZ_FNWC01000006.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span466830-470295Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900104635::NZ_FNWC01000006.1::G00004Context members
BQ5364_RS03115BQ5364_RS03120
Partner locus tags
BQ5364_RS03115BQ5364_RS03120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004612059.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBQ5364_RS03120Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FNWC01000006.1Sequence record reported by the local genomic context database.
Genomic interval468 433-470 295 nt1 863 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span466 830-470 295 ntGCF_900104635::NZ_FNWC01000006.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900104635::NZ_FNWC01000006.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNWC01000006.1All displayed genes belong to this local TCS context.
Neighborhood span466 830-470 295 nt3 466 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
466 830 nt470 295 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BQ5364_RS03115GCF_900104635#BQ5364_RS03115
RRunclassified
466 830-468 443 nt · Forward (+)
BQ5364_RS03120GCF_900104635#BQ5364_RS03120
HKClassicCurrent focus
468 433-470 295 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027697655#PG826_RS07445Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0974015
Simplified PFAM architecture for HKOC_0974015
PFAM domain coverage: 415 / 620 aa (66.9%)
1 aa620 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[56-285] | His_kinase[386-464] | HATPase_c[482-587]
- Domain count: 3
- Matched identifier: HKOC_0974015
- Positioned domains: dCache_1 56-285 ; His_kinase 386-464 ; HATPase_c 482-587
Cluster members and taxonomy
Representative gene: GCF_027697655#PG826_RS07445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 870 993 · GCF_900104635
AssemblyPRJEB16356 · Contigreference genome · haploid
Genome composition3 601 259 bp · 40,0% GCCoprococcus phoceensis
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key