1 HAMP#1
142-211 aa · 70 aa · 15.3% of protein
Raw token
HAMP:142:0.00000000000854:211:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BQ5364_RS00435
Histidine kinase, Classic
Coprococcus phoceensis · GCF_900104635
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900104635#BQ5364_RS00435Stable P2CS identifier used across views.
GenomeGCF_900104635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 457 aa (52.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
236-300 aa · 65 aa · 14.2% of protein
Raw token
HisKA:236:0.0000000000234:300:65:643 HATPase_c#3
346-449 aa · 104 aa · 22.8% of protein
Raw token
HATPase_c:346:8.41e-19:449:108:109- Raw architecture: HAMP:142:0.00000000000854:211:70:69#HisKA:236:0.0000000000234:300:65:64#HATPase_c:346:8.41e-19:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900104635::NZ_FNWC01000005.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67581-69615Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900104635::NZ_FNWC01000005.1::G00006Context members
BQ5364_RS00435BQ5364_RS00440
Partner locus tags
BQ5364_RS00435BQ5364_RS00440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004614922.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35UN82Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35UN82_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBQ5364_RS00435Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FNWC01000005.1Sequence record reported by the local genomic context database.
Genomic interval67 581-68 954 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 581-69 615 ntGCF_900104635::NZ_FNWC01000005.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900104635::NZ_FNWC01000005.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNWC01000005.1All displayed genes belong to this local TCS context.
Neighborhood span67 581-69 615 nt2 035 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 581 nt69 615 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BQ5364_RS00435GCF_900104635#BQ5364_RS00435
HKClassicCurrent focus
67 581-68 954 nt · Reverse (-)
BQ5364_RS00440GCF_900104635#BQ5364_RS00440
RROmpR
68 944-69 615 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433755#DW120_RS20375Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1877217
Simplified PFAM architecture for HKOC_1877217
PFAM domain coverage: 217 / 457 aa (47.5%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[161-210] | HisKA[237-300] | HATPase_c[347-449]
- Domain count: 3
- Matched identifier: HKOC_1877217
- Positioned domains: HAMP 161-210 ; HisKA 237-300 ; HATPase_c 347-449
Cluster members and taxonomy
Representative gene: GCF_003433755#DW120_RS20375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 870 993 · GCF_900104635
AssemblyPRJEB16356 · Contigreference genome · haploid
Genome composition3 601 259 bp · 40,0% GCCoprococcus phoceensis
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key