1 HisKA_3#1
242-304 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:242:8.1e-18:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLS09_RS06845
Histidine kinase, Classic
Bifidobacterium longum · GCF_900103055
ClassHKTypeClassicLength869 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900103055#BLS09_RS06845Stable P2CS identifier used across views.
GenomeGCF_900103055Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 869 aa (17.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.000000000000189:439:104:109- Raw architecture: HisKA_3:242:8.1e-18:304:63:68#HATPase_c:353:0.000000000000189:439:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900103055::NZ_LT629712.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1543851-1547282Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMN04489749_1334RefSeq proteinWP_032683867.1
Context group ID
GCF_900103055::NZ_LT629712.1::G00009Context members
BLS09_RS06845BLS09_RS06850
Partner locus tags
BLS09_RS06845BLS09_RS06850
Partner old locus tags
SAMN04489749_1334SAMN04489749_1335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032683867.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BFW2Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BFW2_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLS09_RS06845Primary locus identifier stored in the genes table.
Old locus tagSAMN04489749_1334Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LT629712.1Sequence record reported by the local genomic context database.
Genomic interval1 543 851-1 546 460 nt2 610 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 543 851-1 547 282 ntGCF_900103055::NZ_LT629712.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900103055::NZ_LT629712.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LT629712.1All displayed genes belong to this local TCS context.
Neighborhood span1 543 851-1 547 282 nt3 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 543 851 nt1 547 282 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLS09_RS06845GCF_900103055#BLS09_RS06845
HKClassicCurrent focus
1 543 851-1 546 460 nt · Forward (+)
BLS09_RS06850GCF_900103055#BLS09_RS06850
RRNarL
1 546 536-1 547 282 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741625#BLSS_RS02575Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0459548
Simplified PFAM architecture for HKOC_0459548
PFAM domain coverage: 418 / 869 aa (48.1%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-682]
- Domain count: 4
- Matched identifier: HKOC_0459548
- Positioned domains: DUF7134 10-147 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-682
Cluster members and taxonomy
Representative gene: GCF_000741625#BLSS_RS02575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_900103055
AssemblyIMG-taxon 2636416037 annotated assembly · Chromosomehaploid
Genome composition2 392 976 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key