1 Response_reg#1
13-95 aa · 83 aa · 36.1% of protein
Raw token
Response_reg:13:0.0000000000357:95:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLS09_RS03955
Response regulator NarL family
Bifidobacterium longum · GCF_900103055
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900103055#BLS09_RS03955Stable P2CS identifier used across views.
GenomeGCF_900103055Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage138 / 230 aa (60.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-223 aa · 55 aa · 23.9% of protein
Raw token
HTH_LUXR:169:1.88e-16:223:55:58- Raw architecture: Response_reg:13:0.0000000000357:95:83:111#HTH_LUXR:169:1.88e-16:223:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900103055::NZ_LT629712.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span931478-932170Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMN04489749_0762RefSeq proteinWP_032684018.1
Context group ID
GCF_900103055::NZ_LT629712.1::G00005Context members
BLS09_RS03955
Partner locus tags
BLS09_RS03955
Partner old locus tags
SAMN04489749_0762
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032684018.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BC04Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BC04_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLS09_RS03955Primary locus identifier stored in the genes table.
Old locus tagSAMN04489749_0762Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LT629712.1Sequence record reported by the local genomic context database.
Genomic interval931 478-932 170 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span931 478-932 170 ntGCF_900103055::NZ_LT629712.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900103055::NZ_LT629712.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LT629712.1All displayed genes belong to this local TCS context.
Neighborhood span931 478-932 170 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
931 478 nt932 170 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BLS09_RS03955GCF_900103055#BLS09_RS03955
RRNarLCurrent focus
931 478-932 170 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741625#BLSS_RS01635Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1203766
Simplified PFAM architecture for RROC_1203766
PFAM domain coverage: 151 / 230 aa (65.7%)
1 aa230 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-109] | GerE[170-222]
- Domain count: 2
- Matched identifier: RROC_1203766
- Positioned domains: Response_reg 12-109 ; Response_reg 12-109 ; GerE 170-222 ; GerE 170-222
Cluster members and taxonomy
Representative gene: GCF_000741625#BLSS_RS01635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_900103055
AssemblyIMG-taxon 2636416037 annotated assembly · Chromosomehaploid
Genome composition2 392 976 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key