1 HisKA#1
194-255 aa · 62 aa · 15.1% of protein
Raw token
HisKA:194:0.00000000316:255:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BC88300_RS01485
Histidine kinase, Classic
Bacillus mycoides · GCF_900094345
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900094345#BC88300_RS01485Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 410 aa (41.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa410 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
302-407 aa · 106 aa · 25.9% of protein
Raw token
HATPase_c:302:1.91e-24:407:106:109- Raw architecture: HisKA:194:0.00000000316:255:62:64#HATPase_c:302:1.91e-24:407:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900094345::NZ_FLZU01000002.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span266869-268798Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWINRA5_00336%2CCCY81_RS01520RefSeq proteinWP_088037941.1
Context group ID
GCF_900094345::NZ_FLZU01000002.1::G00036Context members
BC88300_RS01480BC88300_RS01485
Partner locus tags
BC88300_RS01480BC88300_RS01485
Partner old locus tags
BWINRA5_00335%2CCCY81_RS01515BWINRA5_00336%2CCCY81_RS01520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088037941.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBC88300_RS01485Primary locus identifier stored in the genes table.
Old locus tagBWINRA5_00336%2CCCY81_RS01520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FLZU01000002.1Sequence record reported by the local genomic context database.
Genomic interval267 566-268 798 nt1 233 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span266 869-268 798 ntGCF_900094345::NZ_FLZU01000002.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900094345::NZ_FLZU01000002.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FLZU01000002.1All displayed genes belong to this local TCS context.
Neighborhood span266 869-268 798 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
266 869 nt268 798 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BC88300_RS01480GCF_900094345#BC88300_RS01480
RROmpR
266 869-267 561 nt · Forward (+)
BC88300_RS01485GCF_900094345#BC88300_RS01485
HKClassicCurrent focus
267 566-268 798 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900094345#BC88300_RS01485The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2362323
Simplified PFAM architecture for HKOC_2362323
PFAM domain coverage: 168 / 410 aa (41.0%)
1 aa410 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[194-255] | HATPase_c[302-407]
- Domain count: 2
- Matched identifier: HKOC_2362323
- Positioned domains: HisKA 194-255 ; HATPase_c 302-407
Cluster members and taxonomy
Representative gene: GCF_900094345#BC88300_RS01485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_900094345
AssemblyASM90009434v1 · Scaffoldhaploid
Genome composition5 788 931 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 69 · RR 60CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key