1 sCache_like#1
40-131 aa · 92 aa · 16.4% of protein
Raw token
sCache_like:40:0.0000000871:131:99:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVP34_RS06985
Histidine kinase, Classic
uncultured Blautia sp. · GCF_900066325
ClassHKTypeClassicLength560 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900066325#QVP34_RS06985Stable P2CS identifier used across views.
GenomeGCF_900066325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length560 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage268 / 560 aa (47.9%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa560 aa
Domain-by-domain annotation3 items
2 HisKA#2
332-397 aa · 66 aa · 11.8% of protein
Raw token
HisKA:332:1.35e-18:397:66:643 HATPase_c#3
441-550 aa · 110 aa · 19.6% of protein
Raw token
HATPase_c:441:2.2e-31:550:110:109- Raw architecture: sCache_like:40:0.0000000871:131:99:114#HisKA:332:1.35e-18:397:66:64#HATPase_c:441:2.2e-31:550:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900066325::NZ_FMES01000005.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span63570-65252Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545287_01389RefSeq proteinWP_330383032.1
Context group ID
GCF_900066325::NZ_FMES01000005.1::G00015Context members
QVP34_RS06985
Partner locus tags
QVP34_RS06985
Partner old locus tags
SAMEA3545287_01389
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330383032.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVP34_RS06985Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545287_01389Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMES01000005.1Sequence record reported by the local genomic context database.
Genomic interval63 570-65 252 nt1 683 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 570-65 252 ntGCF_900066325::NZ_FMES01000005.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066325::NZ_FMES01000005.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMES01000005.1All displayed genes belong to this local TCS context.
Neighborhood span63 570-65 252 nt1 683 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 570 nt65 252 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QVP34_RS06985GCF_900066325#QVP34_RS06985
HKClassicCurrent focus
63 570-65 252 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017850375#QDH93_RS08370Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1259479
Simplified PFAM architecture for HKOC_1259479
PFAM domain coverage: 174 / 560 aa (31.1%)
1 aa560 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[332-397] | HATPase_c[444-551]
- Domain count: 2
- Matched identifier: HKOC_1259479
- Positioned domains: HisKA 332-397 ; HATPase_c 444-551
Cluster members and taxonomy
Representative gene: GCF_017850375#QDH93_RS08370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066325
Assembly13414_6#63 · Scaffoldhaploid
Genome composition3 364 810 bp · 44,5% GCuncultured Blautia sp.
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key