1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:4.37e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVP34_RS01345
Response regulator OmpR family
uncultured Blautia sp. · GCF_900066325
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900066325#QVP34_RS01345Stable P2CS identifier used across views.
GenomeGCF_900066325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 227 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.9% of protein
Raw token
Trans_reg_C:148:1.19e-27:224:77:77- Raw architecture: Response_reg:4:4.37e-32:113:111:111#Trans_reg_C:148:1.19e-27:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900066325::NZ_FMES01000001.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span284138-286066Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545287_00268RefSeq proteinWP_055066045.1
Context group ID
GCF_900066325::NZ_FMES01000001.1::G00018Context members
QVP34_RS01340QVP34_RS01345
Partner locus tags
QVP34_RS01340QVP34_RS01345
Partner old locus tags
SAMEA3545287_00267SAMEA3545287_00268
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055066045.1Primary protein accession used for annex mappings.
UniProt accessionA0A174CTM1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174CTM1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVP34_RS01345Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545287_00268Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMES01000001.1Sequence record reported by the local genomic context database.
Genomic interval285 383-286 066 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span284 138-286 066 ntGCF_900066325::NZ_FMES01000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066325::NZ_FMES01000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMES01000001.1All displayed genes belong to this local TCS context.
Neighborhood span284 138-286 066 nt1 929 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
284 138 nt286 066 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVP34_RS01340GCF_900066325#QVP34_RS01340
HKClassic
284 138-285 373 nt · Reverse (-)
QVP34_RS01345GCF_900066325#QVP34_RS01345
RROmpRCurrent focus
285 383-286 066 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS07965Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1360159
Simplified PFAM architecture for RROC_1360159
PFAM domain coverage: 186 / 227 aa (81.9%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1360159
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS07965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066325
Assembly13414_6#63 · Scaffoldhaploid
Genome composition3 364 810 bp · 44,5% GCuncultured Blautia sp.
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key