1 Response_reg#1
2-114 aa · 113 aa · 50.4% of protein
Raw token
Response_reg:2:1.74e-31:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVP34_RS05735
Response regulator OmpR family
uncultured Blautia sp. · GCF_900066325
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900066325#QVP34_RS05735Stable P2CS identifier used across views.
GenomeGCF_900066325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:147:1.87e-34:220:77:77- Raw architecture: Response_reg:2:1.74e-31:114:113:111#Trans_reg_C:147:1.87e-34:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900066325::NZ_FMES01000004.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32046-34072Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545287_01137RefSeq proteinWP_288161822.1
Context group ID
GCF_900066325::NZ_FMES01000004.1::G00036Context members
QVP34_RS05735QVP34_RS05740
Partner locus tags
QVP34_RS05735QVP34_RS05740
Partner old locus tags
SAMEA3545287_01137SAMEA3545287_01138
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288161822.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVP34_RS05735Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545287_01137Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMES01000004.1Sequence record reported by the local genomic context database.
Genomic interval32 046-32 720 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span32 046-34 072 ntGCF_900066325::NZ_FMES01000004.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066325::NZ_FMES01000004.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMES01000004.1All displayed genes belong to this local TCS context.
Neighborhood span32 046-34 072 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 046 nt34 072 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVP34_RS05735GCF_900066325#QVP34_RS05735
RROmpRCurrent focus
32 046-32 720 nt · Forward (+)
QVP34_RS05740GCF_900066325#QVP34_RS05740
HKClassic
32 717-34 072 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900066325#QVP34_RS05735The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1582865
Simplified PFAM architecture for RROC_1582865
PFAM domain coverage: 185 / 224 aa (82.6%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1582865
- Positioned domains: Response_reg 2-113 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_900066325#QVP34_RS05735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066325
Assembly13414_6#63 · Scaffoldhaploid
Genome composition3 364 810 bp · 44,5% GCuncultured Blautia sp.
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key