1 Response_reg#1
6-113 aa · 108 aa · 62.1% of protein
Raw token
Response_reg:6:0.0000000000000162:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVP34_RS04670
Response regulator, unclassified
uncultured Blautia sp. · GCF_900066325
ClassRRTypeunclassifiedLength174 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900066325#QVP34_RS04670Stable P2CS identifier used across views.
GenomeGCF_900066325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length174 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage108 / 174 aa (62.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa174 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:0.0000000000000162:113:110:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900066325::NZ_FMES01000003.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span65954-66478Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545287_00923RefSeq proteinWP_178015691.1
Context group ID
GCF_900066325::NZ_FMES01000003.1::G00004Context members
QVP34_RS04670
Partner locus tags
QVP34_RS04670
Partner old locus tags
SAMEA3545287_00923
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_178015691.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVP34_RS04670Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545287_00923Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMES01000003.1Sequence record reported by the local genomic context database.
Genomic interval65 954-66 478 nt525 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span65 954-66 478 ntGCF_900066325::NZ_FMES01000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066325::NZ_FMES01000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMES01000003.1All displayed genes belong to this local TCS context.
Neighborhood span65 954-66 478 nt525 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 954 nt66 478 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QVP34_RS04670GCF_900066325#QVP34_RS04670
RRunclassifiedCurrent focus
65 954-66 478 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900066325#QVP34_RS04670The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2195239
Simplified PFAM architecture for RROC_2195239
PFAM domain coverage: 109 / 174 aa (62.6%)
1 aa174 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-114]
- Domain count: 1
- Matched identifier: RROC_2195239
- Positioned domains: Response_reg 6-114
Cluster members and taxonomy
Representative gene: GCF_900066325#QVP34_RS04670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066325
Assembly13414_6#63 · Scaffoldhaploid
Genome composition3 364 810 bp · 44,5% GCuncultured Blautia sp.
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key