1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:9.87e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVP34_RS02915
Response regulator NarL family
uncultured Blautia sp. · GCF_900066325
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900066325#QVP34_RS02915Stable P2CS identifier used across views.
GenomeGCF_900066325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 206 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.7% of protein
Raw token
HTH_LUXR:149:2.17e-21:201:53:58- Raw architecture: Response_reg:3:9.87e-26:103:101:111#HTH_LUXR:149:2.17e-21:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900066325::NZ_FMES01000001.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span626447-628382Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545287_00575RefSeq proteinWP_114001699.1
Context group ID
GCF_900066325::NZ_FMES01000001.1::G00026Context members
QVP34_RS02910QVP34_RS02915
Partner locus tags
QVP34_RS02910QVP34_RS02915
Partner old locus tags
SAMEA3545287_00574SAMEA3545287_00575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_114001699.1Primary protein accession used for annex mappings.
UniProt accessionA0A367G564Primary UniProt accession resolved in the annex database.
UniProt IDA0A367G564_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVP34_RS02915Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545287_00575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMES01000001.1Sequence record reported by the local genomic context database.
Genomic interval627 762-628 382 nt621 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span626 447-628 382 ntGCF_900066325::NZ_FMES01000001.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066325::NZ_FMES01000001.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMES01000001.1All displayed genes belong to this local TCS context.
Neighborhood span626 447-628 382 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
626 447 nt628 382 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVP34_RS02910GCF_900066325#QVP34_RS02910
HKClassic
626 447-627 628 nt · Forward (+)
QVP34_RS02915GCF_900066325#QVP34_RS02915
RRNarLCurrent focus
627 762-628 382 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003324155#C4886_RS03315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2083196
Simplified PFAM architecture for RROC_2083196
PFAM domain coverage: 156 / 206 aa (75.7%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[148-201]
- Domain count: 2
- Matched identifier: RROC_2083196
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 148-201 ; GerE 148-201
Cluster members and taxonomy
Representative gene: GCF_003324155#C4886_RS03315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066325
Assembly13414_6#63 · Scaffoldhaploid
Genome composition3 364 810 bp · 44,5% GCuncultured Blautia sp.
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key