1 HisKA#1
674-739 aa · 66 aa · 7.3% of protein
Raw token
HisKA:674:0.00000000000000328:739:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACIRUQ_RS00440
Histidine kinase, Classic
Eubacterium ramulus · GCF_045002895
ClassHKTypeClassicLength907 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_045002895#ACIRUQ_RS00440Stable P2CS identifier used across views.
GenomeGCF_045002895Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length907 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 907 aa (19.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
785-891 aa · 107 aa · 11.8% of protein
Raw token
HATPase_c:785:0.000000000229:891:112:109- Raw architecture: HisKA:674:0.00000000000000328:739:66:64#HATPase_c:785:0.000000000229:891:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_045002895::NZ_CP173382.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83607-87052Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACIRUQ_00440RefSeq proteinWP_055290175.1
Context group ID
GCF_045002895::NZ_CP173382.1::G00003Context members
ACIRUQ_RS00435ACIRUQ_RS00440
Partner locus tags
ACIRUQ_RS00435ACIRUQ_RS00440
Partner old locus tags
ACIRUQ_00435ACIRUQ_00440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055290175.1Primary protein accession used for annex mappings.
UniProt accessionA0A173TE64Primary UniProt accession resolved in the annex database.
UniProt IDA0A173TE64_EUBRADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACIRUQ_RS00440Primary locus identifier stored in the genes table.
Old locus tagACIRUQ_00440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP173382.1Sequence record reported by the local genomic context database.
Genomic interval84 329-87 052 nt2 724 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 607-87 052 ntGCF_045002895::NZ_CP173382.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_045002895::NZ_CP173382.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP173382.1All displayed genes belong to this local TCS context.
Neighborhood span83 607-87 052 nt3 446 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 607 nt87 052 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACIRUQ_RS00435GCF_045002895#ACIRUQ_RS00435
RROmpR
83 607-84 314 nt · Forward (+)
ACIRUQ_RS00440GCF_045002895#ACIRUQ_RS00440
HKClassicCurrent focus
84 329-87 052 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS07065Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0395416
Simplified PFAM architecture for HKOC_0395416
PFAM domain coverage: 158 / 907 aa (17.4%)
1 aa907 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[674-739] | HATPase_c[786-877]
- Domain count: 2
- Matched identifier: HKOC_0395416
- Positioned domains: HisKA 674-739 ; HATPase_c 786-877
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS07065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_045002895
AssemblyASM4500289v1 · Complete Genomereference genome · haploid
Genome composition3 378 009 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 71 · HK 36 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key