1 dCache_1#1
101-288 aa · 188 aa · 30.8% of protein
Raw token
dCache_1:101:0.0000049:288:196:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACIRUQ_RS00185
Histidine kinase, Classic
Eubacterium ramulus · GCF_045002895
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_045002895#ACIRUQ_RS00185Stable P2CS identifier used across views.
GenomeGCF_045002895Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage449 / 610 aa (73.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 HAMP#2
306-375 aa · 70 aa · 11.5% of protein
Raw token
HAMP:306:0.000000000000974:375:70:693 His_kinase#3
390-469 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:390:1.15e-27:469:80:804 HATPase_c#4
486-596 aa · 111 aa · 18.2% of protein
Raw token
HATPase_c:486:0.00000000000837:596:111:109- Raw architecture: dCache_1:101:0.0000049:288:196:195#HAMP:306:0.000000000000974:375:70:69#His_kinase:390:1.15e-27:469:80:80#HATPase_c:486:0.00000000000837:596:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_045002895::NZ_CP173382.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41932-44953Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACIRUQ_00185RefSeq proteinWP_055290189.1
Context group ID
GCF_045002895::NZ_CP173382.1::G00001Context members
ACIRUQ_RS00185ACIRUQ_RS00190
Partner locus tags
ACIRUQ_RS00185ACIRUQ_RS00190
Partner old locus tags
ACIRUQ_00185ACIRUQ_00190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055290189.1Primary protein accession used for annex mappings.
UniProt accessionA0A173TH86Primary UniProt accession resolved in the annex database.
UniProt IDA0A173TH86_EUBRADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACIRUQ_RS00185Primary locus identifier stored in the genes table.
Old locus tagACIRUQ_00185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP173382.1Sequence record reported by the local genomic context database.
Genomic interval41 932-43 764 nt1 833 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 932-44 953 ntGCF_045002895::NZ_CP173382.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_045002895::NZ_CP173382.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP173382.1All displayed genes belong to this local TCS context.
Neighborhood span41 932-44 953 nt3 022 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 932 nt44 953 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACIRUQ_RS00185GCF_045002895#ACIRUQ_RS00185
HKClassicCurrent focus
41 932-43 764 nt · Forward (+)
ACIRUQ_RS00190GCF_045002895#ACIRUQ_RS00190
RRunclassified
43 739-44 953 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS07320Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1004920
Simplified PFAM architecture for HKOC_1004920
PFAM domain coverage: 241 / 610 aa (39.5%)
1 aa610 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[324-375] | His_kinase[390-468] | HATPase_c[488-597]
- Domain count: 3
- Matched identifier: HKOC_1004920
- Positioned domains: HAMP 324-375 ; His_kinase 390-468 ; HATPase_c 488-597
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS07320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_045002895
AssemblyASM4500289v1 · Complete Genomereference genome · haploid
Genome composition3 378 009 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 71 · HK 36 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key