1 Response_reg#1
7-119 aa · 113 aa · 50.9% of protein
Raw token
Response_reg:7:1.83e-25:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH960_RS08325
Response regulator NarL family
Bacillus sp. RC252 · GCF_044909215
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044909215#ABH960_RS08325Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 222 aa (76.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-215 aa · 57 aa · 25.7% of protein
Raw token
HTH_LUXR:159:5.98e-25:215:57:58- Raw architecture: Response_reg:7:1.83e-25:119:113:111#HTH_LUXR:159:5.98e-25:215:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044909215::NZ_JBIYDV010000004.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span289978-291800Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH960_001669RefSeq proteinWP_002087571.1
Context group ID
GCF_044909215::NZ_JBIYDV010000004.1::G00018Context members
ABH960_RS08320ABH960_RS08325
Partner locus tags
ABH960_RS08320ABH960_RS08325
Partner old locus tags
ABH960_001668ABH960_001669
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002087571.1Primary protein accession used for annex mappings.
UniProt accessionJ9C9U6Primary UniProt accession resolved in the annex database.
UniProt IDJ9C9U6_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH960_RS08325Primary locus identifier stored in the genes table.
Old locus tagABH960_001669Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDV010000004.1Sequence record reported by the local genomic context database.
Genomic interval291 132-291 800 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span289 978-291 800 ntGCF_044909215::NZ_JBIYDV010000004.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044909215::NZ_JBIYDV010000004.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDV010000004.1All displayed genes belong to this local TCS context.
Neighborhood span289 978-291 800 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
289 978 nt291 800 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH960_RS08320GCF_044909215#ABH960_RS08320
HKClassic
289 978-291 135 nt · Forward (+)
ABH960_RS08325GCF_044909215#ABH960_RS08325
RRNarLCurrent focus
291 132-291 800 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS09235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1638343
Simplified PFAM architecture for RROC_1638343
PFAM domain coverage: 168 / 222 aa (75.7%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-118] | GerE[160-215]
- Domain count: 2
- Matched identifier: RROC_1638343
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; GerE 160-215 ; GerE 160-215
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS09235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 289 · GCF_044909215
AssemblyASM4490921v1 · Contighaploid
Genome composition5 774 316 bp · 35,5% GCBacillus sp. RC252
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key