1 HAMP#1
172-235 aa · 64 aa · 13.3% of protein
Raw token
HAMP:172:0.00000000000497:235:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH960_RS00645
Histidine kinase, Classic
Bacillus sp. RC252 · GCF_044909215
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044909215#ABH960_RS00645Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 481 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
248-314 aa · 67 aa · 13.9% of protein
Raw token
HisKA:248:0.000000000000892:314:67:643 HATPase_c#3
364-473 aa · 110 aa · 22.9% of protein
Raw token
HATPase_c:364:3.82e-23:473:110:109- Raw architecture: HAMP:172:0.00000000000497:235:64:69#HisKA:248:0.000000000000892:314:67:64#HATPase_c:364:3.82e-23:473:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044909215::NZ_JBIYDV010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span108891-111025Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH960_000127RefSeq proteinWP_404442599.1
Context group ID
GCF_044909215::NZ_JBIYDV010000001.1::G00001Context members
ABH960_RS00645ABH960_RS00650
Partner locus tags
ABH960_RS00645ABH960_RS00650
Partner old locus tags
ABH960_000127ABH960_000128
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404442599.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH960_RS00645Primary locus identifier stored in the genes table.
Old locus tagABH960_000127Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDV010000001.1Sequence record reported by the local genomic context database.
Genomic interval108 891-110 336 nt1 446 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span108 891-111 025 ntGCF_044909215::NZ_JBIYDV010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044909215::NZ_JBIYDV010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span108 891-111 025 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 891 nt111 025 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH960_RS00645GCF_044909215#ABH960_RS00645
HKClassicCurrent focus
108 891-110 336 nt · Reverse (-)
ABH960_RS00650GCF_044909215#ABH960_RS00650
RROmpR
110 336-111 025 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044909215#ABH960_RS00645The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1618462
Simplified PFAM architecture for HKOC_1618462
PFAM domain coverage: 224 / 481 aa (46.6%)
1 aa481 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-235] | HisKA[249-312] | HATPase_c[364-473]
- Domain count: 3
- Matched identifier: HKOC_1618462
- Positioned domains: HAMP 186-235 ; HisKA 249-312 ; HATPase_c 364-473
Cluster members and taxonomy
Representative gene: GCF_044909215#ABH960_RS00645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 289 · GCF_044909215
AssemblyASM4490921v1 · Contighaploid
Genome composition5 774 316 bp · 35,5% GCBacillus sp. RC252
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key