1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:1.93e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH964_RS19270
Response regulator OmpR family
Bacillus sp. RC92 · GCF_044908975
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908975#ABH964_RS19270Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 237 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 31.2% of protein
Raw token
Trans_reg_C:156:1.48e-31:229:74:77- Raw architecture: Response_reg:5:1.93e-40:114:111:111#Trans_reg_C:156:1.48e-31:229:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908975::NZ_JBIYDU010000006.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span159853-161642Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH964_003881RefSeq proteinWP_033728919.1
Context group ID
GCF_044908975::NZ_JBIYDU010000006.1::G00051Context members
ABH964_RS19265ABH964_RS19270
Partner locus tags
ABH964_RS19265ABH964_RS19270
Partner old locus tags
ABH964_003880ABH964_003881
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033728919.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH964_RS19270Primary locus identifier stored in the genes table.
Old locus tagABH964_003881Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDU010000006.1Sequence record reported by the local genomic context database.
Genomic interval160 929-161 642 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span159 853-161 642 ntGCF_044908975::NZ_JBIYDU010000006.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908975::NZ_JBIYDU010000006.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDU010000006.1All displayed genes belong to this local TCS context.
Neighborhood span159 853-161 642 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
159 853 nt161 642 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH964_RS19265GCF_044908975#ABH964_RS19265
HKClassic
159 853-160 932 nt · Reverse (-)
ABH964_RS19270GCF_044908975#ABH964_RS19270
RROmpRCurrent focus
160 929-161 642 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000517985#C174_RS01985Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0963132
Simplified PFAM architecture for RROC_0963132
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0963132
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000517985#C174_RS01985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 293 · GCF_044908975
AssemblyASM4490897v1 · Contighaploid
Genome composition5 692 938 bp · 35,0% GCBacillus sp. RC92
Signal transduction countsGenes 141 · HK 76 · RR 65CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key