1 HisKA_3#1
184-247 aa · 64 aa · 10.8% of protein
Raw token
HisKA_3:184:0.00000000000000746:247:66:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH948_RS07205
Histidine kinase, Hybrid
Bacillus sp. RC218 · GCF_044908635
ClassHKTypeHybridLength591 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_044908635#ABH948_RS07205Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_cResponse_regHTH_LUXR
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage319 / 591 aa (54.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
285-372 aa · 88 aa · 14.9% of protein
Raw token
HATPase_c:285:0.000000000000146:372:106:1093 Response_reg#3
382-493 aa · 112 aa · 19.0% of protein
Raw token
Response_reg:382:6.32e-30:493:112:1114 HTH_LUXR#4
530-584 aa · 55 aa · 9.3% of protein
Raw token
HTH_LUXR:530:5.02e-18:584:55:58- Raw architecture: HisKA_3:184:0.00000000000000746:247:66:68#HATPase_c:285:0.000000000000146:372:106:109#Response_reg:382:6.32e-30:493:112:111#HTH_LUXR:530:5.02e-18:584:55:58
- Domain description: 1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_044908635::NZ_JBIYDI010000002.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span649605-651380Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH948_001455RefSeq proteinWP_404517862.1
Context group ID
GCF_044908635::NZ_JBIYDI010000002.1::G00017Context members
ABH948_RS07205
Partner locus tags
ABH948_RS07205
Partner old locus tags
ABH948_001455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404517862.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH948_RS07205Primary locus identifier stored in the genes table.
Old locus tagABH948_001455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDI010000002.1Sequence record reported by the local genomic context database.
Genomic interval649 605-651 380 nt1 776 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span649 605-651 380 ntGCF_044908635::NZ_JBIYDI010000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908635::NZ_JBIYDI010000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span649 605-651 380 nt1 776 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
649 605 nt651 380 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABH948_RS07205GCF_044908635#ABH948_RS07205
HKHybridCurrent focus
649 605-651 380 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044908635#ABH948_RS07205The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c + Response_reg + GerE4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1109663
Simplified PFAM architecture for HKOC_1109663
PFAM domain coverage: 316 / 591 aa (53.5%)
1 aa591 aa
HisKA_3HATPase_cResponse_regGerE
- Simplified architecture: HisKA_3 + HATPase_c + Response_reg + GerE
- Raw architecture: HisKA_3[184-247] | HATPase_c[286-371] | Response_reg[382-492] | GerE[530-584]
- Domain count: 4
- Matched identifier: HKOC_1109663
- Positioned domains: HisKA_3 184-247 ; HATPase_c 286-371 ; Response_reg 382-492 ; GerE 530-584
Cluster members and taxonomy
Representative gene: GCF_044908635#ABH948_RS07205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 282 · GCF_044908635
AssemblyASM4490863v1 · Contighaploid
Genome composition5 773 184 bp · 35,0% GCBacillus sp. RC218
Signal transduction countsGenes 137 · HK 73 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key