1 Response_reg#1
4-112 aa · 109 aa · 48.4% of protein
Raw token
Response_reg:4:8.78e-19:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH958_RS13410
Response regulator, unclassified
Bacillus sp. RC250 · GCF_044908455
ClassRRTypeunclassifiedLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_044908455#ABH958_RS13410Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 225 aa (48.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:8.78e-19:112:109:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_044908455::NZ_JBIYDE010000005.1::G00037
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span181729-182406Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH958_002676RefSeq proteinWP_404446297.1
Context group ID
GCF_044908455::NZ_JBIYDE010000005.1::G00037Context members
ABH958_RS13410
Partner locus tags
ABH958_RS13410
Partner old locus tags
ABH958_002676
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404446297.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH958_RS13410Primary locus identifier stored in the genes table.
Old locus tagABH958_002676Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDE010000005.1Sequence record reported by the local genomic context database.
Genomic interval181 729-182 406 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span181 729-182 406 ntGCF_044908455::NZ_JBIYDE010000005.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908455::NZ_JBIYDE010000005.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDE010000005.1All displayed genes belong to this local TCS context.
Neighborhood span181 729-182 406 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
181 729 nt182 406 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABH958_RS13410GCF_044908455#ABH958_RS13410
RRunclassifiedCurrent focus
181 729-182 406 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044908245#ABH957_RS25410Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1523757
Simplified PFAM architecture for RROC_1523757
PFAM domain coverage: 175 / 225 aa (77.8%)
1 aa225 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[4-113] | HTH_64[158-222]
- Domain count: 2
- Matched identifier: RROC_1523757
- Positioned domains: Response_reg 4-113 ; HTH_64 158-222
Cluster members and taxonomy
Representative gene: GCF_044908245#ABH957_RS25410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 287 · GCF_044908455
AssemblyASM4490845v1 · Contighaploid
Genome composition5 648 001 bp · 35,0% GCBacillus sp. RC250
Signal transduction countsGenes 130 · HK 68 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key