1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:5.04e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH958_RS00585
Response regulator OmpR family
Bacillus sp. RC250 · GCF_044908455
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_044908455#ABH958_RS00585Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 228 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-224 aa · 74 aa · 32.5% of protein
Raw token
Trans_reg_C:151:6.07e-29:224:77:77- Raw architecture: Response_reg:5:5.04e-36:114:111:111#Trans_reg_C:151:6.07e-29:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_044908455::NZ_JBIYDE010000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span111500-112186Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH958_000116RefSeq proteinWP_404453192.1
Context group ID
GCF_044908455::NZ_JBIYDE010000001.1::G00004Context members
ABH958_RS00585
Partner locus tags
ABH958_RS00585
Partner old locus tags
ABH958_000116
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404453192.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH958_RS00585Primary locus identifier stored in the genes table.
Old locus tagABH958_000116Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDE010000001.1Sequence record reported by the local genomic context database.
Genomic interval111 500-112 186 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span111 500-112 186 ntGCF_044908455::NZ_JBIYDE010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908455::NZ_JBIYDE010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span111 500-112 186 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 500 nt112 186 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABH958_RS00585GCF_044908455#ABH958_RS00585
RROmpRCurrent focus
111 500-112 186 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044907945#ABH955_RS02580Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1350027
Simplified PFAM architecture for RROC_1350027
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-224]
- Domain count: 2
- Matched identifier: RROC_1350027
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 151-224
Cluster members and taxonomy
Representative gene: GCF_044907945#ABH955_RS02580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 287 · GCF_044908455
AssemblyASM4490845v1 · Contighaploid
Genome composition5 648 001 bp · 35,0% GCBacillus sp. RC250
Signal transduction countsGenes 130 · HK 68 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key