Gene detail

ABH958_RS12465

Response regulator NarL family

Bacillus sp. RC250 · GCF_044908455

Open genome Open selected cluster RefSeq

ClassRRTypeNarLLength205 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_044908455#ABH958_RS12465Stable P2CS identifier used across views.

GenomeGCF_044908455Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus

Selected clusterRROC_0585417Run 7 · 4 sequences · id 100% · cov 80%

External referencesWP_404455365.1 · MIST4 ABH958_RS12465RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

Response_regHTH_LUXR

Protein length205 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage158 / 205 aa (77.1%)Merged over positioned domains only.

Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa205 aa

Domain-by-domain annotation2 items

1 Response_reg#1

2-103 aa · 102 aa · 49.8% of protein

Raw tokenResponse_reg:2:1.35e-29:103:102:111

2 HTH_LUXR#2

144-199 aa · 56 aa · 27.3% of protein

Raw tokenHTH_LUXR:144:1.24e-16:199:56:58

Raw architecture: Response_reg:2:1.35e-29:103:102:111#HTH_LUXR:144:1.24e-16:199:56:58
Domain description: 1 Response_reg,1 HTH_LUXR
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_044908455::NZ_JBIYDE010000004.1::G00036

Group size11 locus tag listed below.

HK / RR0 / 1Counts resolved for the local TCS neighborhood.

Context span489778-490395Genomic interval covered by the local TCS group.

Identifiers

Old locus tagABH958_002491RefSeq proteinWP_404455365.1

Context group IDGCF_044908455::NZ_JBIYDE010000004.1::G00036

Context members

ABH958_RS12465

Partner locus tags

ABH958_RS12465

Partner old locus tags

ABH958_002491

Partner protein IDs

WP_404455365.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_404455365.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagABH958_RS12465Primary locus identifier stored in the genes table.

Old locus tagABH958_002491Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_JBIYDE010000004.1Sequence record reported by the local genomic context database.

Genomic interval489 778-490 395 nt618 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span489 778-490 395 ntGCF_044908455::NZ_JBIYDE010000004.1::G00036

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_044908455::NZ_JBIYDE010000004.1::G00036

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_JBIYDE010000004.1All displayed genes belong to this local TCS context.

Neighborhood span489 778-490 395 nt618 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

489 778 nt490 395 nt

+-ABH958_RS12465

Neighborhood gene cards

1 gene in the current local neighborhood.

ABH958_RS12465GCF_044908455#ABH958_RS12465

RRNarLCurrent focus

489 778-490 395 nt · Reverse (-)

Old locus ABH958_002491RefSeq WP_404455365.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

RROC_0585417RR

Run 74 sequencesid 100%cov 80%

PFAM HATPase_c + Response_reg + GerE

Representative GCF_000003925#BMYCO0001_RS25690

Selected clusterRROC_0585417Run 7 · RR · 4 sequences

Representative sequenceGCF_000003925#BMYCO0001_RS25690Use this link to inspect the representative gene detail.

PFAM architectureHATPase_c + Response_reg + GerE3 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for RROC_0585417

Simplified PFAM architecture for RROC_0585417

PFAM domain coverage: 229 / 291 aa (78.7%)

1 aa291 aa

HATPase_cResponse_regGerE

Simplified architecture: HATPase_c + Response_reg + GerE
Raw architecture: HATPase_c[4-67] | Response_reg[78-188] | GerE[231-284]
Domain count: 3
Matched identifier: RROC_0585417
Positioned domains: HATPase_c 4-67 ; HATPase_c 4-67 ; Response_reg 78-188 ; Response_reg 78-188 ; GerE 231-284 ; GerE 231-284

Cluster members and taxonomy

Representative gene: GCF_000003925#BMYCO0001_RS25690

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 3 156 287 · GCF_044908455

AssemblyASM4490845v1 · Contighaploid

Genome composition5 648 001 bp · 35,0% GCBacillus sp. RC250

Signal transduction countsGenes 130 · HK 68 · RR 62CheA 1 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus

Open genome Search genes in genome Search RR genes NCBI assembly files

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Preview from the same derived genome key