1 HAMP#1
58-126 aa · 69 aa · 19.2% of protein
Raw token
HAMP:58:0.00000000267:126:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH958_RS12225
Histidine kinase, Classic
Bacillus sp. RC250 · GCF_044908455
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908455#ABH958_RS12225Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 359 aa (64.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-201 aa · 64 aa · 17.8% of protein
Raw token
HisKA:138:0.0000000000000175:201:64:643 HATPase_c#3
250-348 aa · 99 aa · 27.6% of protein
Raw token
HATPase_c:250:9.91e-17:348:99:109- Raw architecture: HAMP:58:0.00000000267:126:69:69#HisKA:138:0.0000000000000175:201:64:64#HATPase_c:250:9.91e-17:348:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908455::NZ_JBIYDE010000004.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span425563-427325Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH958_002444RefSeq proteinWP_404455287.1
Context group ID
GCF_044908455::NZ_JBIYDE010000004.1::G00032Context members
ABH958_RS12220ABH958_RS12225
Partner locus tags
ABH958_RS12220ABH958_RS12225
Partner old locus tags
ABH958_002443ABH958_002444
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404455287.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH958_RS12225Primary locus identifier stored in the genes table.
Old locus tagABH958_002444Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDE010000004.1Sequence record reported by the local genomic context database.
Genomic interval426 246-427 325 nt1 080 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span425 563-427 325 ntGCF_044908455::NZ_JBIYDE010000004.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908455::NZ_JBIYDE010000004.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDE010000004.1All displayed genes belong to this local TCS context.
Neighborhood span425 563-427 325 nt1 763 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
425 563 nt427 325 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH958_RS12220GCF_044908455#ABH958_RS12220
RROmpR
425 563-426 249 nt · Forward (+)
ABH958_RS12225GCF_044908455#ABH958_RS12225
HKClassicCurrent focus
426 246-427 325 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044908455#ABH958_RS12225The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2758437
Simplified PFAM architecture for HKOC_2758437
PFAM domain coverage: 204 / 359 aa (56.8%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[83-125] | HisKA[138-201] | HATPase_c[251-347]
- Domain count: 3
- Matched identifier: HKOC_2758437
- Positioned domains: HAMP 83-125 ; HisKA 138-201 ; HATPase_c 251-347
Cluster members and taxonomy
Representative gene: GCF_044908455#ABH958_RS12225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 287 · GCF_044908455
AssemblyASM4490845v1 · Contighaploid
Genome composition5 648 001 bp · 35,0% GCBacillus sp. RC250
Signal transduction countsGenes 130 · HK 68 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key