1 Response_reg#1
4-114 aa · 111 aa · 45.1% of protein
Raw token
Response_reg:4:2.52e-27:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH958_RS09935
Response regulator LytTR family
Bacillus sp. RC250 · GCF_044908455
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908455#ABH958_RS09935Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 246 aa (84.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
148-244 aa · 97 aa · 39.4% of protein
Raw token
LytTR:148:3.95e-37:244:97:98- Raw architecture: Response_reg:4:2.52e-27:114:113:111#LytTR:148:3.95e-37:244:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908455::NZ_JBIYDE010000003.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span499406-501893Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH958_001985RefSeq proteinWP_088293189.1
Context group ID
GCF_044908455::NZ_JBIYDE010000003.1::G00027Context members
ABH958_RS09935ABH958_RS09940
Partner locus tags
ABH958_RS09935ABH958_RS09940
Partner old locus tags
ABH958_001985ABH958_001986
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088293189.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH958_RS09935Primary locus identifier stored in the genes table.
Old locus tagABH958_001985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDE010000003.1Sequence record reported by the local genomic context database.
Genomic interval499 406-500 146 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span499 406-501 893 ntGCF_044908455::NZ_JBIYDE010000003.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908455::NZ_JBIYDE010000003.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDE010000003.1All displayed genes belong to this local TCS context.
Neighborhood span499 406-501 893 nt2 488 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
499 406 nt501 893 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH958_RS09935GCF_044908455#ABH958_RS09935
RRLytTRCurrent focus
499 406-500 146 nt · Reverse (-)
ABH958_RS09940GCF_044908455#ABH958_RS09940
HKClassic
500 124-501 893 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002200025#CEV00_RS15920Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0773076
Simplified PFAM architecture for RROC_0773076
PFAM domain coverage: 206 / 246 aa (83.7%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[149-244]
- Domain count: 2
- Matched identifier: RROC_0773076
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 149-244 ; LytTR 149-244
Cluster members and taxonomy
Representative gene: GCF_002200025#CEV00_RS15920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 287 · GCF_044908455
AssemblyASM4490845v1 · Contighaploid
Genome composition5 648 001 bp · 35,0% GCBacillus sp. RC250
Signal transduction countsGenes 130 · HK 68 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key