1 Response_reg#1
5-112 aa · 108 aa · 47.2% of protein
Raw token
Response_reg:5:2.07e-33:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH958_RS07995
Response regulator OmpR family
Bacillus sp. RC250 · GCF_044908455
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908455#ABH958_RS07995Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 229 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:150:2.59e-24:225:76:77- Raw architecture: Response_reg:5:2.07e-33:112:110:111#Trans_reg_C:150:2.59e-24:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908455::NZ_JBIYDE010000003.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span106373-108507Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH958_001602RefSeq proteinWP_404454480.1
Context group ID
GCF_044908455::NZ_JBIYDE010000003.1::G00019Context members
ABH958_RS07990ABH958_RS07995
Partner locus tags
ABH958_RS07990ABH958_RS07995
Partner old locus tags
ABH958_001601ABH958_001602
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404454480.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH958_RS07995Primary locus identifier stored in the genes table.
Old locus tagABH958_001602Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDE010000003.1Sequence record reported by the local genomic context database.
Genomic interval107 818-108 507 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span106 373-108 507 ntGCF_044908455::NZ_JBIYDE010000003.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908455::NZ_JBIYDE010000003.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDE010000003.1All displayed genes belong to this local TCS context.
Neighborhood span106 373-108 507 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
106 373 nt108 507 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH958_RS07990GCF_044908455#ABH958_RS07990
HKClassic
106 373-107 818 nt · Reverse (-)
ABH958_RS07995GCF_044908455#ABH958_RS07995
RROmpRCurrent focus
107 818-108 507 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044907945#ABH955_RS22155Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1297416
Simplified PFAM architecture for RROC_1297416
PFAM domain coverage: 183 / 229 aa (79.9%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[150-224]
- Domain count: 2
- Matched identifier: RROC_1297416
- Positioned domains: Response_reg 5-112 ; Trans_reg_C 150-224
Cluster members and taxonomy
Representative gene: GCF_044907945#ABH955_RS22155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 287 · GCF_044908455
AssemblyASM4490845v1 · Contighaploid
Genome composition5 648 001 bp · 35,0% GCBacillus sp. RC250
Signal transduction countsGenes 130 · HK 68 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key