1 HAMP#1
55-122 aa · 68 aa · 20.4% of protein
Raw token
HAMP:55:0.0000011:122:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH958_RS00865
Histidine kinase, Classic
Bacillus sp. RC250 · GCF_044908455
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908455#ABH958_RS00865Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage198 / 333 aa (59.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-190 aa · 54 aa · 16.2% of protein
Raw token
HisKA:137:0.0000000056:190:54:643 HATPase_c#3
246-321 aa · 76 aa · 22.8% of protein
Raw token
HATPase_c:246:0.000000000337:321:96:109- Raw architecture: HAMP:55:0.0000011:122:71:69#HisKA:137:0.0000000056:190:54:64#HATPase_c:246:0.000000000337:321:96:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908455::NZ_JBIYDE010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span160983-162652Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH958_000174RefSeq proteinWP_404453269.1
Context group ID
GCF_044908455::NZ_JBIYDE010000001.1::G00005Context members
ABH958_RS00860ABH958_RS00865
Partner locus tags
ABH958_RS00860ABH958_RS00865
Partner old locus tags
ABH958_000173ABH958_000174
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404453269.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH958_RS00865Primary locus identifier stored in the genes table.
Old locus tagABH958_000174Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDE010000001.1Sequence record reported by the local genomic context database.
Genomic interval161 651-162 652 nt1 002 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span160 983-162 652 ntGCF_044908455::NZ_JBIYDE010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908455::NZ_JBIYDE010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span160 983-162 652 nt1 670 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 983 nt162 652 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH958_RS00860GCF_044908455#ABH958_RS00860
RROmpR
160 983-161 654 nt · Forward (+)
ABH958_RS00865GCF_044908455#ABH958_RS00865
HKClassicCurrent focus
161 651-162 652 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044908455#ABH958_RS00865The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2853286
Simplified PFAM architecture for HKOC_2853286
PFAM domain coverage: 130 / 333 aa (39.0%)
1 aa333 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[137-190] | HATPase_c[247-322]
- Domain count: 2
- Matched identifier: HKOC_2853286
- Positioned domains: HisKA 137-190 ; HATPase_c 247-322
Cluster members and taxonomy
Representative gene: GCF_044908455#ABH958_RS00865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 287 · GCF_044908455
AssemblyASM4490845v1 · Contighaploid
Genome composition5 648 001 bp · 35,0% GCBacillus sp. RC250
Signal transduction countsGenes 130 · HK 68 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key