1 HAMP#1
186-253 aa · 68 aa · 14.1% of protein
Raw token
HAMP:186:0.00000000000948:253:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH955_RS24280
Histidine kinase, Classic
Bacillus sp. RC240 · GCF_044907945
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044907945#ABH955_RS24280Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 481 aa (50.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
259-324 aa · 66 aa · 13.7% of protein
Raw token
HisKA:259:0.0000000000000456:324:66:643 HATPase_c#3
371-480 aa · 110 aa · 22.9% of protein
Raw token
HATPase_c:371:1.34e-32:480:110:109- Raw architecture: HAMP:186:0.00000000000948:253:70:69#HisKA:259:0.0000000000000456:324:66:64#HATPase_c:371:1.34e-32:480:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044907945::NZ_JBIYCT010000010.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103230-105424Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH955_004877RefSeq proteinWP_404448632.1
Context group ID
GCF_044907945::NZ_JBIYCT010000010.1::G00066Context members
ABH955_RS24275ABH955_RS24280
Partner locus tags
ABH955_RS24275ABH955_RS24280
Partner old locus tags
ABH955_004876ABH955_004877
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404448632.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH955_RS24280Primary locus identifier stored in the genes table.
Old locus tagABH955_004877Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYCT010000010.1Sequence record reported by the local genomic context database.
Genomic interval103 979-105 424 nt1 446 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 230-105 424 ntGCF_044907945::NZ_JBIYCT010000010.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044907945::NZ_JBIYCT010000010.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYCT010000010.1All displayed genes belong to this local TCS context.
Neighborhood span103 230-105 424 nt2 195 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 230 nt105 424 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH955_RS24275GCF_044907945#ABH955_RS24275
RROmpR
103 230-103 901 nt · Forward (+)
ABH955_RS24280GCF_044907945#ABH955_RS24280
HKClassicCurrent focus
103 979-105 424 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044907945#ABH955_RS24280The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1618458
Simplified PFAM architecture for HKOC_1618458
PFAM domain coverage: 225 / 481 aa (46.8%)
1 aa481 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[204-253] | HisKA[260-324] | HATPase_c[371-480]
- Domain count: 3
- Matched identifier: HKOC_1618458
- Positioned domains: HAMP 204-253 ; HisKA 260-324 ; HATPase_c 371-480
Cluster members and taxonomy
Representative gene: GCF_044907945#ABH955_RS24280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 285 · GCF_044907945
AssemblyASM4490794v1 · Contighaploid
Genome composition5 639 312 bp · 35,0% GCBacillus sp. RC240
Signal transduction countsGenes 128 · HK 68 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key