1 Response_reg#1
15-125 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:15:0.00000000000866:125:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH0RH_RS03440
Response regulator NarL family
Bifidobacterium longum · GCF_043845685
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_043845685#ACH0RH_RS03440Stable P2CS identifier used across views.
GenomeGCF_043845685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 223 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-214 aa · 55 aa · 24.7% of protein
Raw token
HTH_LUXR:160:1.04e-16:214:55:58- Raw architecture: Response_reg:15:0.00000000000866:125:112:111#HTH_LUXR:160:1.04e-16:214:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_043845685::NZ_JBAMGV010000002.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span348638-349309Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_043845685::NZ_JBAMGV010000002.1::G00006Context members
ACH0RH_RS03440
Partner locus tags
ACH0RH_RS03440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_394894547.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH0RH_RS03440Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBAMGV010000002.1Sequence record reported by the local genomic context database.
Genomic interval348 638-349 309 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span348 638-349 309 ntGCF_043845685::NZ_JBAMGV010000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_043845685::NZ_JBAMGV010000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMGV010000002.1All displayed genes belong to this local TCS context.
Neighborhood span348 638-349 309 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
348 638 nt349 309 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACH0RH_RS03440GCF_043845685#ACH0RH_RS03440
RRNarLCurrent focus
348 638-349 309 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_043845685#ACH0RH_RS03440The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1631740
Simplified PFAM architecture for RROC_1631740
PFAM domain coverage: 163 / 223 aa (73.1%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[15-124] | GerE[162-214]
- Domain count: 2
- Matched identifier: RROC_1631740
- Positioned domains: Response_reg 15-124 ; GerE 162-214
Cluster members and taxonomy
Representative gene: GCF_043845685#ACH0RH_RS03440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_043845685
AssemblyASM4384568v1 · Contighaploid
Genome composition2 684 604 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 10 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key