1 Response_reg#1
10-119 aa · 110 aa · 22.0% of protein
Raw token
Response_reg:10:3.07e-22:119:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH0SM_RS01285
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_043845405
ClassRRTypeunclassifiedLength500 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_043845405#ACH0SM_RS01285Stable P2CS identifier used across views.
GenomeGCF_043845405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 500 aa (37.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa500 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-449 aa · 42 aa · 8.4% of protein
Raw token
HTH_AraC:408:0.0000000206:449:42:423 HTH_AraC#3
468-500 aa · 33 aa · 6.6% of protein
Raw token
HTH_AraC:468:0.000000000817:500:33:42- Raw architecture: Response_reg:10:3.07e-22:119:110:111#HTH_AraC:408:0.0000000206:449:42:42#HTH_AraC:468:0.000000000817:500:33:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_043845405::NZ_JBAMGN010000002.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span60049-61551Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_043845405::NZ_JBAMGN010000002.1::G00003Context members
ACH0SM_RS01285
Partner locus tags
ACH0SM_RS01285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390429294.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH0SM_RS01285Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBAMGN010000002.1Sequence record reported by the local genomic context database.
Genomic interval60 049-61 551 nt1 503 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 049-61 551 ntGCF_043845405::NZ_JBAMGN010000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_043845405::NZ_JBAMGN010000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMGN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span60 049-61 551 nt1 503 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 049 nt61 551 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACH0SM_RS01285GCF_043845405#ACH0SM_RS01285
RRunclassifiedCurrent focus
60 049-61 551 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042847305#ACGHAT_RS15360Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0158840
Simplified PFAM architecture for RROC_0158840
PFAM domain coverage: 185 / 500 aa (37.0%)
1 aa500 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[10-119] | HTH_AraC[408-449] | HTH_AraC[468-500]
- Domain count: 3
- Matched identifier: RROC_0158840
- Positioned domains: Response_reg 10-119 ; HTH_AraC 408-449 ; HTH_AraC 468-500
Cluster members and taxonomy
Representative gene: GCF_042847305#ACGHAT_RS15360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_043845405
AssemblyASM4384540v1 · Scaffoldhaploid
Genome composition3 777 056 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 47 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key