1 Response_reg#1
4-109 aa · 106 aa · 48.2% of protein
Raw token
Response_reg:4:9.73e-31:109:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH0SM_RS03340
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_043845405
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_043845405#ACH0SM_RS03340Stable P2CS identifier used across views.
GenomeGCF_043845405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 220 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:144:6.64e-24:218:76:77- Raw architecture: Response_reg:4:9.73e-31:109:110:111#Trans_reg_C:144:6.64e-24:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_043845405::NZ_JBAMGN010000004.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7167-7829Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_043845405::NZ_JBAMGN010000004.1::G00008Context members
ACH0SM_RS03340
Partner locus tags
ACH0SM_RS03340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173882837.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH0SM_RS03340Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBAMGN010000004.1Sequence record reported by the local genomic context database.
Genomic interval7 167-7 829 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 167-7 829 ntGCF_043845405::NZ_JBAMGN010000004.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_043845405::NZ_JBAMGN010000004.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMGN010000004.1All displayed genes belong to this local TCS context.
Neighborhood span7 167-7 829 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 167 nt7 829 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACH0SM_RS03340GCF_043845405#ACH0SM_RS03340
RROmpRCurrent focus
7 167-7 829 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302885#G4951_RS13365Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1737486
Simplified PFAM architecture for RROC_1737486
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-109] | Trans_reg_C[144-218]
- Domain count: 2
- Matched identifier: RROC_1737486
- Positioned domains: Response_reg 4-109 ; Trans_reg_C 144-218
Cluster members and taxonomy
Representative gene: GCF_013302885#G4951_RS13365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_043845405
AssemblyASM4384540v1 · Scaffoldhaploid
Genome composition3 777 056 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 47 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key