1 HAMP#1
168-235 aa · 68 aa · 14.6% of protein
Raw token
HAMP:168:0.0000723:235:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHYF_RS05960
Histidine kinase, Classic
Anaerostipes hadrus · GCF_042855195
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042855195#ACGHYF_RS05960Stable P2CS identifier used across views.
GenomeGCF_042855195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 466 aa (52.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
239-305 aa · 67 aa · 14.4% of protein
Raw token
HisKA:239:0.00000000000511:305:67:643 HATPase_c#3
353-463 aa · 111 aa · 23.8% of protein
Raw token
HATPase_c:353:1.26e-29:463:111:109- Raw architecture: HAMP:168:0.0000723:235:68:69#HisKA:239:0.00000000000511:305:67:64#HATPase_c:353:1.26e-29:463:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042855195::NZ_BAABXM010000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1234273-1236391Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF160043M1_11860RefSeq proteinWP_390585071.1
Context group ID
GCF_042855195::NZ_BAABXM010000001.1::G00012Context members
ACGHYF_RS05960ACGHYF_RS05965
Partner locus tags
ACGHYF_RS05960ACGHYF_RS05965
Partner old locus tags
F160043M1_11860F160043M1_11870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390585071.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHYF_RS05960Primary locus identifier stored in the genes table.
Old locus tagF160043M1_11860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAABXM010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 234 273-1 235 673 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 234 273-1 236 391 ntGCF_042855195::NZ_BAABXM010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042855195::NZ_BAABXM010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAABXM010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 234 273-1 236 391 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 234 273 nt1 236 391 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHYF_RS05960GCF_042855195#ACGHYF_RS05960
HKClassicCurrent focus
1 234 273-1 235 673 nt · Reverse (-)
ACGHYF_RS05965GCF_042855195#ACGHYF_RS05965
RROmpR
1 235 702-1 236 391 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042855195#ACGHYF_RS05960The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1771528
Simplified PFAM architecture for HKOC_1771528
PFAM domain coverage: 178 / 466 aa (38.2%)
1 aa466 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[239-305] | HATPase_c[353-463]
- Domain count: 2
- Matched identifier: HKOC_1771528
- Positioned domains: HisKA 239-305 ; HATPase_c 353-463
Cluster members and taxonomy
Representative gene: GCF_042855195#ACGHYF_RS05960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_042855195
AssemblyASM4285519v1 · Contighaploid
Genome composition3 254 317 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 27 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key