1 HisKA#1
155-218 aa · 64 aa · 16.8% of protein
Raw token
HisKA:155:0.0000000000121:218:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHYF_RS01655
Histidine kinase, Classic
Anaerostipes hadrus · GCF_042855195
ClassHKTypeClassicLength381 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042855195#ACGHYF_RS01655Stable P2CS identifier used across views.
GenomeGCF_042855195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length381 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 381 aa (46.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa381 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
267-378 aa · 112 aa · 29.4% of protein
Raw token
HATPase_c:267:1.18e-24:378:113:109- Raw architecture: HisKA:155:0.0000000000121:218:64:64#HATPase_c:267:1.18e-24:378:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042855195::NZ_BAABXM010000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span342280-344104Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF160043M1_03230RefSeq proteinWP_008393878.1
Context group ID
GCF_042855195::NZ_BAABXM010000001.1::G00008Context members
ACGHYF_RS01650ACGHYF_RS01655
Partner locus tags
ACGHYF_RS01650ACGHYF_RS01655
Partner old locus tags
F160043M1_03220F160043M1_03230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008393878.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2I1L0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2I1L0_ANAHADisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHYF_RS01655Primary locus identifier stored in the genes table.
Old locus tagF160043M1_03230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAABXM010000001.1Sequence record reported by the local genomic context database.
Genomic interval342 959-344 104 nt1 146 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span342 280-344 104 ntGCF_042855195::NZ_BAABXM010000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042855195::NZ_BAABXM010000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAABXM010000001.1All displayed genes belong to this local TCS context.
Neighborhood span342 280-344 104 nt1 825 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
342 280 nt344 104 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHYF_RS01650GCF_042855195#ACGHYF_RS01650
RROmpR
342 280-342 981 nt · Forward (+)
ACGHYF_RS01655GCF_042855195#ACGHYF_RS01655
HKClassicCurrent focus
342 959-344 104 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS05610Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2600336
Simplified PFAM architecture for HKOC_2600336
PFAM domain coverage: 174 / 381 aa (45.7%)
1 aa381 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[156-218] | HATPase_c[267-377]
- Domain count: 2
- Matched identifier: HKOC_2600336
- Positioned domains: HisKA 156-218 ; HATPase_c 267-377
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS05610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_042855195
AssemblyASM4285519v1 · Contighaploid
Genome composition3 254 317 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 27 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key