1 Response_reg#1
9-145 aa · 137 aa · 46.4% of protein
Raw token
Response_reg:9:3.24e-27:145:137:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGG97_RS04290
Response regulator NarL family
Bifidobacterium longum · GCF_042848215
ClassRRTypeNarLLength295 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042848215#ACGG97_RS04290Stable P2CS identifier used across views.
GenomeGCF_042848215Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length295 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage195 / 295 aa (66.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa295 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
232-289 aa · 58 aa · 19.7% of protein
Raw token
HTH_LUXR:232:8.1e-25:289:58:58- Raw architecture: Response_reg:9:3.24e-27:145:137:111#HTH_LUXR:232:8.1e-25:289:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042848215::NZ_BAABYA010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1023200-1026568Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI040019C4_08430RefSeq proteinWP_390366858.1
Context group ID
GCF_042848215::NZ_BAABYA010000001.1::G00005Context members
ACGG97_RS04290ACGG97_RS04295
Partner locus tags
ACGG97_RS04290ACGG97_RS04295
Partner old locus tags
I040019C4_08430I040019C4_08440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390366858.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGG97_RS04290Primary locus identifier stored in the genes table.
Old locus tagI040019C4_08430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAABYA010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 023 200-1 024 087 nt888 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 023 200-1 026 568 ntGCF_042848215::NZ_BAABYA010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042848215::NZ_BAABYA010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAABYA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 023 200-1 026 568 nt3 369 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 023 200 nt1 026 568 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGG97_RS04290GCF_042848215#ACGG97_RS04290
RRNarLCurrent focus
1 023 200-1 024 087 nt · Reverse (-)
ACGG97_RS04295GCF_042848215#ACGG97_RS04295
HKClassic
1 024 109-1 026 568 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042848215#ACGG97_RS04290The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0582473
Simplified PFAM architecture for RROC_0582473
PFAM domain coverage: 125 / 295 aa (42.4%)
1 aa295 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-77] | GerE[234-289]
- Domain count: 2
- Matched identifier: RROC_0582473
- Positioned domains: Response_reg 9-77 ; GerE 234-289
Cluster members and taxonomy
Representative gene: GCF_042848215#ACGG97_RS04290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_042848215
AssemblyASM4284821v1 · Contighaploid
Genome composition2 506 089 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key