1 Response_reg#1
5-114 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:5:2.16e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAP_RS13615
Response regulator OmpR family
Blautia wexlerae · GCF_042847785
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042847785#ACGHAP_RS13615Stable P2CS identifier used across views.
GenomeGCF_042847785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 233 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-230 aa · 76 aa · 32.6% of protein
Raw token
Trans_reg_C:155:7.24e-32:230:76:77- Raw architecture: Response_reg:5:2.16e-36:114:111:111#Trans_reg_C:155:7.24e-32:230:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042847785::NZ_AP031426.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2857289-2859062Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI2200191F5_25920RefSeq proteinWP_004853366.1
Context group ID
GCF_042847785::NZ_AP031426.1::G00052Context members
ACGHAP_RS13610ACGHAP_RS13615
Partner locus tags
ACGHAP_RS13610ACGHAP_RS13615
Partner old locus tags
I2200191F5_25910I2200191F5_25920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004853366.1Primary protein accession used for annex mappings.
UniProt accessionA0A174H2T5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174H2T5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAP_RS13615Primary locus identifier stored in the genes table.
Old locus tagI2200191F5_25920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031426.1Sequence record reported by the local genomic context database.
Genomic interval2 858 361-2 859 062 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 857 289-2 859 062 ntGCF_042847785::NZ_AP031426.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847785::NZ_AP031426.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031426.1All displayed genes belong to this local TCS context.
Neighborhood span2 857 289-2 859 062 nt1 774 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 857 289 nt2 859 062 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHAP_RS13610GCF_042847785#ACGHAP_RS13610
HKClassic
2 857 289-2 858 374 nt · Reverse (-)
ACGHAP_RS13615GCF_042847785#ACGHAP_RS13615
RROmpRCurrent focus
2 858 361-2 859 062 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS15865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080559
Simplified PFAM architecture for RROC_1080559
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1080559
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS15865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_042847785
AssemblyASM4284778v1 · Complete Genomehaploid
Genome composition4 644 539 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 150 · HK 71 · RR 76CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key