1 Response_reg#1
12-120 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:12:6.61e-32:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAP_RS09290
Response regulator OmpR family
Blautia wexlerae · GCF_042847785
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042847785#ACGHAP_RS09290Stable P2CS identifier used across views.
GenomeGCF_042847785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 233 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 31.8% of protein
Raw token
Trans_reg_C:156:2.16e-28:229:74:77- Raw architecture: Response_reg:12:6.61e-32:120:110:111#Trans_reg_C:156:2.16e-28:229:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042847785::NZ_AP031426.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1926867-1928961Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI2200191F5_17420RefSeq proteinWP_055153910.1
Context group ID
GCF_042847785::NZ_AP031426.1::G00040Context members
ACGHAP_RS09285ACGHAP_RS09290
Partner locus tags
ACGHAP_RS09285ACGHAP_RS09290
Partner old locus tags
I2200191F5_17410I2200191F5_17420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055153910.1Primary protein accession used for annex mappings.
UniProt accessionA0A174U6N3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174U6N3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAP_RS09290Primary locus identifier stored in the genes table.
Old locus tagI2200191F5_17420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031426.1Sequence record reported by the local genomic context database.
Genomic interval1 928 260-1 928 961 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 926 867-1 928 961 ntGCF_042847785::NZ_AP031426.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847785::NZ_AP031426.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031426.1All displayed genes belong to this local TCS context.
Neighborhood span1 926 867-1 928 961 nt2 095 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 926 867 nt1 928 961 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHAP_RS09285GCF_042847785#ACGHAP_RS09285
HKClassic
1 926 867-1 928 255 nt · Reverse (-)
ACGHAP_RS09290GCF_042847785#ACGHAP_RS09290
RROmpRCurrent focus
1 928 260-1 928 961 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS20500Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1085133
Simplified PFAM architecture for RROC_1085133
PFAM domain coverage: 183 / 233 aa (78.5%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-229]
- Domain count: 2
- Matched identifier: RROC_1085133
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-229 ; Trans_reg_C 156-229
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS20500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_042847785
AssemblyASM4284778v1 · Complete Genomehaploid
Genome composition4 644 539 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 150 · HK 71 · RR 76CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key