1 Response_reg#1
3-113 aa · 111 aa · 46.3% of protein
Raw token
Response_reg:3:0.00000000000000119:113:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAP_RS08620
Response regulator LytTR family
Blautia wexlerae · GCF_042847785
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042847785#ACGHAP_RS08620Stable P2CS identifier used across views.
GenomeGCF_042847785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 240 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-228 aa · 90 aa · 37.5% of protein
Raw token
LytTR:139:0.00000000903:228:95:98- Raw architecture: Response_reg:3:0.00000000000000119:113:114:111#LytTR:139:0.00000000903:228:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042847785::NZ_AP031426.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1804992-1805714Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI2200191F5_16220RefSeq proteinWP_173706164.1
Context group ID
GCF_042847785::NZ_AP031426.1::G00035Context members
ACGHAP_RS08620
Partner locus tags
ACGHAP_RS08620
Partner old locus tags
I2200191F5_16220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173706164.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAP_RS08620Primary locus identifier stored in the genes table.
Old locus tagI2200191F5_16220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031426.1Sequence record reported by the local genomic context database.
Genomic interval1 804 992-1 805 714 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 804 992-1 805 714 ntGCF_042847785::NZ_AP031426.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847785::NZ_AP031426.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031426.1All displayed genes belong to this local TCS context.
Neighborhood span1 804 992-1 805 714 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 804 992 nt1 805 714 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGHAP_RS08620GCF_042847785#ACGHAP_RS08620
RRLytTRCurrent focus
1 804 992-1 805 714 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013304535#G5A81_RS00715Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0891440
Simplified PFAM architecture for RROC_0891440
PFAM domain coverage: 199 / 240 aa (82.9%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-115] | LytTR[139-226]
- Domain count: 2
- Matched identifier: RROC_0891440
- Positioned domains: Response_reg 5-115 ; LytTR 139-226
Cluster members and taxonomy
Representative gene: GCF_013304535#G5A81_RS00715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_042847785
AssemblyASM4284778v1 · Complete Genomehaploid
Genome composition4 644 539 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 150 · HK 71 · RR 76CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key