1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:1.67e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAP_RS07935
Response regulator OmpR family
Blautia wexlerae · GCF_042847785
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042847785#ACGHAP_RS07935Stable P2CS identifier used across views.
GenomeGCF_042847785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 227 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.9% of protein
Raw token
Trans_reg_C:148:1.9e-27:224:77:77- Raw architecture: Response_reg:4:1.67e-32:113:111:111#Trans_reg_C:148:1.9e-27:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042847785::NZ_AP031426.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1663291-1665219Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI2200191F5_14870RefSeq proteinWP_276913232.1
Context group ID
GCF_042847785::NZ_AP031426.1::G00032Context members
ACGHAP_RS07935ACGHAP_RS07940
Partner locus tags
ACGHAP_RS07935ACGHAP_RS07940
Partner old locus tags
I2200191F5_14870I2200191F5_14880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276913232.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAP_RS07935Primary locus identifier stored in the genes table.
Old locus tagI2200191F5_14870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031426.1Sequence record reported by the local genomic context database.
Genomic interval1 663 291-1 663 974 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 663 291-1 665 219 ntGCF_042847785::NZ_AP031426.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847785::NZ_AP031426.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031426.1All displayed genes belong to this local TCS context.
Neighborhood span1 663 291-1 665 219 nt1 929 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 663 291 nt1 665 219 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHAP_RS07935GCF_042847785#ACGHAP_RS07935
RROmpRCurrent focus
1 663 291-1 663 974 nt · Forward (+)
ACGHAP_RS07940GCF_042847785#ACGHAP_RS07940
HKClassic
1 663 984-1 665 219 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS02305Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1381199
Simplified PFAM architecture for RROC_1381199
PFAM domain coverage: 186 / 227 aa (81.9%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1381199
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS02305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_042847785
AssemblyASM4284778v1 · Complete Genomehaploid
Genome composition4 644 539 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 150 · HK 71 · RR 76CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key