1 Response_reg#1
3-110 aa · 108 aa · 46.0% of protein
Raw token
Response_reg:3:5.33e-19:110:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAP_RS07485
Response regulator LytTR family
Blautia wexlerae · GCF_042847785
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042847785#ACGHAP_RS07485Stable P2CS identifier used across views.
GenomeGCF_042847785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 235 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-226 aa · 90 aa · 38.3% of protein
Raw token
LytTR:137:6.77e-18:226:95:98- Raw architecture: Response_reg:3:5.33e-19:110:112:111#LytTR:137:6.77e-18:226:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042847785::NZ_AP031426.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1581422-1582129Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI2200191F5_14010RefSeq proteinWP_022381201.1
Context group ID
GCF_042847785::NZ_AP031426.1::G00031Context members
ACGHAP_RS07485
Partner locus tags
ACGHAP_RS07485
Partner old locus tags
I2200191F5_14010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022381201.1Primary protein accession used for annex mappings.
UniProt accessionA0A174VVE9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174VVE9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAP_RS07485Primary locus identifier stored in the genes table.
Old locus tagI2200191F5_14010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031426.1Sequence record reported by the local genomic context database.
Genomic interval1 581 422-1 582 129 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 581 422-1 582 129 ntGCF_042847785::NZ_AP031426.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847785::NZ_AP031426.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031426.1All displayed genes belong to this local TCS context.
Neighborhood span1 581 422-1 582 129 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 581 422 nt1 582 129 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGHAP_RS07485GCF_042847785#ACGHAP_RS07485
RRLytTRCurrent focus
1 581 422-1 582 129 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0111990Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1018380
Simplified PFAM architecture for RROC_1018380
PFAM domain coverage: 201 / 235 aa (85.5%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-113] | LytTR[137-226]
- Domain count: 2
- Matched identifier: RROC_1018380
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; LytTR 137-226 ; LytTR 137-226
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0111990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_042847785
AssemblyASM4284778v1 · Complete Genomehaploid
Genome composition4 644 539 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 150 · HK 71 · RR 76CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key