1 HAMP#1
123-189 aa · 67 aa · 15.8% of protein
Raw token
HAMP:123:0.0000000767:189:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAT_RS13435
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_042847305
ClassHKTypeClassicLength425 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042847305#ACGHAT_RS13435Stable P2CS identifier used across views.
GenomeGCF_042847305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length425 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 425 aa (56.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa425 aa
Domain-by-domain annotation3 items
2 HisKA#2
204-273 aa · 70 aa · 16.5% of protein
Raw token
HisKA:204:0.00000000133:273:70:643 HATPase_c#3
319-420 aa · 102 aa · 24.0% of protein
Raw token
HATPase_c:319:2.78e-23:420:103:109- Raw architecture: HAMP:123:0.0000000767:189:67:69#HisKA:204:0.00000000133:273:70:64#HATPase_c:319:2.78e-23:420:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042847305::NZ_AP031447.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2799416-2801400Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK310107B6_26480RefSeq proteinWP_243870775.1
Context group ID
GCF_042847305::NZ_AP031447.1::G00039Context members
ACGHAT_RS13435ACGHAT_RS13440
Partner locus tags
ACGHAT_RS13435ACGHAT_RS13440
Partner old locus tags
K310107B6_26480K310107B6_26490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243870775.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAT_RS13435Primary locus identifier stored in the genes table.
Old locus tagK310107B6_26480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031447.1Sequence record reported by the local genomic context database.
Genomic interval2 799 416-2 800 693 nt1 278 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 799 416-2 801 400 ntGCF_042847305::NZ_AP031447.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847305::NZ_AP031447.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031447.1All displayed genes belong to this local TCS context.
Neighborhood span2 799 416-2 801 400 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 799 416 nt2 801 400 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHAT_RS13435GCF_042847305#ACGHAT_RS13435
HKClassicCurrent focus
2 799 416-2 800 693 nt · Reverse (-)
ACGHAT_RS13440GCF_042847305#ACGHAT_RS13440
RROmpR
2 800 726-2 801 400 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0109720Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2072123
Simplified PFAM architecture for HKOC_2072123
PFAM domain coverage: 217 / 440 aa (49.3%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[159-204] | HisKA[220-287] | HATPase_c[334-436]
- Domain count: 3
- Matched identifier: HKOC_2072123
- Positioned domains: HAMP 159-204 ; HisKA 220-287 ; HATPase_c 334-436
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0109720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_042847305
AssemblyASM4284730v1 · Complete Genomehaploid
Genome composition3 807 276 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 47 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key